Report for 6205.m00045

 > 6205.m00045, length: 1952, copies: 1 

MGGHVIVWILLSVCSWRISAAQAQQPPRTDPVEVAALEAILGRWNKTNSPVWSMSGEPCRGVPVDGVTGLDGNPK

NNPGIKCDCSYINGTVCHITQLKVYALNVVGQIPAELQNLTYLNYLDLDQNYLSGPIPSFIGQLTALTELHVGFN

ALSGPIPKELGNLTNLNLLGISLTNFTGQLPEELGNLTKLQRLYTDSAGLSGPFPSTFSKLKNLKLLRASDNDFT

GKIPDYIGSLTNLEDLAFQGNSFEGPIPESLSNLTKLTTFVLRNCRISGDLGAVDFSKFTKLAFLDLSFNNISGK

VPQSILNLQMLTDLFLGNNSLTGGLPDGISPSLKNLDFSYNQLTGSFPSWATQNNLQLNLVANNFDLGSTNNGIL

PPGLNCLQKDTPCLRGSPEYYSFAVDCGSNRSIRGSDNTMYELDFTDLGSSSYYVTSETRWGVSNVGKYFQSPND

SKIIYSNEKIQNAVVSELLQTARMSPSSLRYFGLGLENGNYTVLLQFAELGYPDSPTWKSLGRRVFDIYIQGDLK

EKDFDIRKMAGGKSFTAVYKSYTATVSKNFLEIHLFWAGKGTCCIPIQGYYGPLISALSITPNFTPTVRNGVPKR

KSKVGAIAGISIGASVVGLAALFGIFMFIKKRRRLAQQQGELYNLVGRPDVFSNAELKLATNNYSSQNILGEGGY

GPVYKISCKLVGLPSKYKCNGMLPDGRVIAVKQLSQSSHQGKNQFVTEVATISSVQHRNLVKLHGCCIDSNTPLL

VYEYLENGSLDQALFSEFKSAHNQQCKIVFYILGNFFSSFFHHLNSQDLKVISACTGKNSLKLDWATRFEIILGI

ARGLTYLHEESSVRIVHRDIKASNVLLDTDLTPKISDFGLARLYDEKKTHVSTGIAGTFGYLAPEYAMRRHLTEK

VDVYAFGVVALETVAGRSNTNNSIEESKIYLLEWAWDLYEKEQAQRIVDPRLEDFNKDEVLRVIHVALLCTQGSP

NQRPPMSRVMAVLTGDAEVVEMVTKPSYITEWQYRDGNSTNSESTTSEFSRQKEIDPLTMSPTITGSSHDGRRFW

MSRQAHKRLHFANFNLRILFKLSKQRELIQQKCLAALNTILGRWGLRASPAWNISGEPCSGVAIDETGVDNNPNI

NPAIKCDCSFNAGTVCHIIRLAVSLNPLSGPLPKEIGNLRNLLSLGISSNNFTGELPAELGNLEKLEQMYIISSG

FSGPFPSTFSKLKNLKILWASDNDLTGKIPDYFGSFPNLQDLILRNCKISDNLGTVNFSKLAGLTLLDLSFNNIT

GHVPQSILNLDKLSFLFLGNNSLSGSLPYDKSPSLNNLDFSYNHLSGSFPPWVTGNNLQLNLVANDFILDSTNNS

ILPSGLNCLQQDTPCFRGSPEYYSFAVDCGSNKSTRGSDNTLYETDAQNIGAASYYVSDNARWGVSSVGKFNEAS

NGSYAIYSPQQFQSALNSELFQTARMSPSSLRYYGIGLENGNYTVSLEFAEFVYPNSLTSNSIGRRVFDIYVQGE

LKEKNFNIRKMAGGKSLIAVNKRYTATVSKNFLEIHLFWAGKDFIPTVQNGVPKKKSKAGTISGVVIGASFFGLA

VLVGLFMLLKKRRRTSQRKEELYNMVGRRNVFSNAELKLATENFGSQNILGEGGYGPVYKGILTDGRVVAVKQLS

QSSQQGKSQFVTEVATISSVQHRNLVKLYGCCIDSNTPLLVYEYLENGSLDQALFGDGRFNLGWSTRFEIILGIA

RGLSYLHEEANVRIVHRDIKASNILLDPDLTPKISDFGLAKLYDEKKTHVNTKVAGTFGYLAPEYAMRGHLTEKV

DVFSFGVVALETVAGRSNTDYSLVEDKKYLFEWAWGLYEREQALGIVDPRLEEINEEEVLRVIRMSFLCTQGSPH

QRPPMSRVVAMLTGDIPVSDVVAKPNYIIELQLRGRNSSHVTTGYSGSTADELSGQRETSPLTPSLEINREIIDD

GR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	117	140	0.85
LRR [Pfam ls]	141	164	1.7
LRR [Pfam ls]	213	236	0.39
LRR [Pfam ls]	237	260	0.26
LRR [Pfam ls]	261	285	4.7
LRR [Pfam ls]	286	309	0.24
LRR [Pfam ls]	332	356	0.85
Ser/Thr pkinase [Pfam fs]	664	916	1.6e-46
Ser/Thr pkinase [Pfam ls]	664	990	4.9e-42
LRR [Pfam ls]	1166	1189	0.54
LRR [Pfam ls]	1214	1237	0.14
LRR [Pfam ls]	1238	1262	4.5
LRR [Pfam ls]	1263	1286	0.27
LRR [Pfam ls]	1309	1332	4.1
Ser/Thr pkinase [Pfam fs]	1619	1815	2.9e-54
Ser/Thr pkinase [Pfam ls]	1619	1889	4.2e-50

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	93	116	1.7
LRR [sensitive, ls]	93	116	45
LRR [sensitive, ls]	117	140	0.032
LRR [sensitive, ls]	117	140	0.85
LRR [sensitive, ls]	141	164	0.064
LRR [sensitive, ls]	141	164	1.7
LRR [sensitive, ls]	165	188	0.6
LRR [sensitive, ls]	165	188	16
LRR [sensitive, ls]	213	236	0.015
LRR [sensitive, ls]	213	236	0.39
LRR [sensitive, ls]	237	260	0.0097
LRR [sensitive, ls]	237	260	0.26
LRR [sensitive, ls]	261	285	0.18
LRR [sensitive, ls]	261	285	4.7
LRR [sensitive, ls]	286	309	0.009
LRR [sensitive, ls]	286	309	0.24
LRR [sensitive, ls]	310	330	0.6
LRR [sensitive, ls]	310	330	16
LRR [sensitive, ls]	332	356	0.032
LRR [sensitive, ls]	332	356	0.85
LRR [sensitive, ls]	1166	1189	0.02
LRR [sensitive, ls]	1166	1189	0.54
LRR [sensitive, ls]	1190	1213	3
LRR [sensitive, ls]	1190	1213	79
LRR [sensitive, ls]	1214	1237	0.0054
LRR [sensitive, ls]	1214	1237	0.14
LRR [sensitive, ls]	1238	1262	0.17
LRR [sensitive, ls]	1238	1262	4.5
LRR [sensitive, ls]	1263	1286	0.01
LRR [sensitive, ls]	1263	1286	0.27
LRR [sensitive, ls]	1287	1308	0.36
LRR [sensitive, ls]	1287	1308	9.5
LRR [sensitive, ls]	1309	1332	0.15
LRR [sensitive, ls]	1309	1332	4.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	76	345	1e-32
Xa21 [O. sativa]	76	336	4e-27
CLV2 [A. thaliana]	84	349	3e-20
Cf-9 [L. pimpinellifolium]	87	418	2e-24
FLS2 [A.thaliana]	87	382	3e-35
FLS2 [A.thaliana]	89	348	2e-35
FLS2 [A.thaliana]	89	376	1e-30
Xa21 [O. sativa]	89	327	2e-28
Xa21 [O. sativa]	89	365	2e-27
FLS2 [A.thaliana]	93	365	8e-41
Xa21 [O. sativa]	94	374	7e-30
Cf-9 [L. pimpinellifolium]	97	356	3e-29
Cf-9 [L. pimpinellifolium]	97	348	5e-21
CLV2 [A. thaliana]	97	378	1e-18
FLS2 [A.thaliana]	103	386	7e-34
CLV2 [A. thaliana]	104	359	4e-25
CLV2 [A. thaliana]	105	350	4e-25
CLV2 [A. thaliana]	106	391	6e-23
Cf-9 [L. pimpinellifolium]	121	349	4e-15
CLV2 [A. thaliana]	170	368	1e-15
Rpg1 [Hordeum vulgare]	640	989	2e-32
FLS2 [A.thaliana]	652	988	3e-32
Pto [L. esculentum]	652	985	3e-48
Rpg1 [Hordeum vulgare]	652	985	4e-24
Cf-9 [L. pimpinellifolium]	1101	1360	6e-12
FLS2 [A.thaliana]	1103	1325	3e-21
FLS2 [A.thaliana]	1104	1363	4e-22
CLV2 [A. thaliana]	1120	1325	1e-16
Cf-9 [L. pimpinellifolium]	1124	1323	9e-21
CLV2 [A. thaliana]	1132	1368	3e-15
FLS2 [A.thaliana]	1138	1325	3e-15
Xa21 [O. sativa]	1138	1364	6e-24
Xa21 [O. sativa]	1138	1373	8e-19
Cf-9 [L. pimpinellifolium]	1142	1322	2e-16
FLS2 [A.thaliana]	1142	1368	1e-19
CLV2 [A. thaliana]	1143	1325	2e-17
CLV2 [A. thaliana]	1143	1336	6e-17
FLS2 [A.thaliana]	1143	1362	4e-21
Cf-9 [L. pimpinellifolium]	1146	1389	3e-11
CLV2 [A. thaliana]	1146	1378	1e-18
FLS2 [A.thaliana]	1146	1887	2e-61
Xa21 [O. sativa]	1146	1704	1e-28
Xa21 [O. sativa]	1155	1325	3e-18
Rpg1 [Hordeum vulgare]	1604	1884	2e-30
Pto [L. esculentum]	1607	1884	7e-55
Rpg1 [Hordeum vulgare]	1612	1888	4e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	561	583	out -> in
putative TM domain	604	626	in -> out
putative TM domain	1562	1584	out -> in

Report for 6205.m00045

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)