Report for 6206.m00088

 > 6206.m00088, length: 750, copies: 1 

MVKSKSLPMIASAAVFLLLLSAALPLSQSYTYEQDVFAINGLYTALGSPSVPGWITNGGDPCNEGWQGVECVVSN

ITSITLNAANLGGQLGNTLGNFTSLITFFLSGNQLSGSIPSTLSTLTLLTGLSLNNNHLSGEIPDAFSTLTGLAN

LDFSSNNLTGPLPPSMGNLTALTSLKDGNPFNTSIAPSALPPAAPTPLPSVSPPAGHVPTKEPSNSSIAPAGNAP

SRKNNVSAMKFVGYILVGVVSAVVLVLMVMFCLSKYKERKSRDDVYTKNQLGRSPQKLGEPKIKEVSDIKEPPVK

LKNNAGKASNVISHTREEQKLNVSTAAASDAVYDSREERKPGSSMSDNFVDEQLHPPQSAVLRTEKVTVHPSVRT

RKGRVPSAGKLDLTTTVKSFSIASLQQYTNSFNEENLIRDSRFGKLLEVLKIDAANSRIPADAFLELVVNISELT

HPNILGLVGYCAEFDQRLLVYEHCSKMTLHDELHYVDDSNKGLSWNARLQVAVGAAKALQYLHDGCQPPIVHQNF

EPSIVLLNSTLVVHISECGLAALSSRSVSQLSGRMRTLFHYEAPEVHESGLLSDRSDVYSFGVVMLELLTGRKPY

DSSRPRAEQHLVRWATSQLYDIDAISKMVDPSIRGQCSEKALSRFVDIISSCIQHEPEFRPSMSEVVQDLTRMHE

KGLLCIAHLICSVSTGEYTRVHKTDEIQSDFVKNRRFNVAPQWFSSEISMGFIHAKTAVPPMSNMEDGIGIVNPG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	99	122	0.42
LRR [Pfam ls]	123	146	0.082
LRR [Pfam ls]	147	170	2.1
Ser/Thr pkinase [Pfam ls]	388	672	1.1e-10
Ser/Thr pkinase [Pfam fs]	451	522	0.00029
Ser/Thr pkinase [Pfam fs]	568	670	1.6e-07

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	75	98	3.6
LRR [sensitive, ls]	75	98	75
LRR [sensitive, ls]	99	122	0.02
LRR [sensitive, ls]	99	122	0.42
LRR [sensitive, ls]	123	146	0.004
LRR [sensitive, ls]	123	146	0.082
LRR [sensitive, ls]	147	170	0.1
LRR [sensitive, ls]	147	170	2.1
LRR [sensitive, ls]	534	557	3.7
LRR [sensitive, ls]	534	557	77

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	6	175	3e-19
FLS2 [A.thaliana]	71	176	7e-13
Xa21 [O. sativa]	73	173	5e-15
Xa21 [O. sativa]	73	275	7e-14
Xa21 [O. sativa]	74	179	2e-11
FLS2 [A.thaliana]	76	676	1e-30
FLS2 [A.thaliana]	85	188	9e-11
Rpg1 [Hordeum vulgare]	393	673	3e-18
Pto [L. esculentum]	395	670	1e-31
Rpg1 [Hordeum vulgare]	395	673	1e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	10	32	out -> in
putative TM domain	236	258	in -> out

Report for 6206.m00088

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)