Report for 6213.m00181

 > 6213.m00181, length: 255, copies: 2 

MPYLVQLLLLTVALTLPTSVHPQSGTPREDDVRCLEGLKTSLGDPDGRLASWTFSNTSAGAICELSGVSCWNPDE

SRIIALSLSGFGLTGAIPSELQFCSAITTLDLSSNRLGGQIPPALCDWLPFVVNLDLSGNQLSGPIPAELANCKF

INSLKLSANSLSGKIPASLVLLGHLKSLDLSNNNLDGDIPPKLAASFSADAFADNPDLVEPHSGFNLGVLFGRPE

AAAAIAFVFGFVGTLFFGPSIIRRVAGRSC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	101	125	0.5
LRR [Pfam ls]	126	149	1
LRR [Pfam ls]	174	198	0.0052

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	101	125	0.019
LRR [sensitive, ls]	101	125	0.5
LRR [sensitive, ls]	126	149	0.039
LRR [sensitive, ls]	126	149	1
LRR [sensitive, ls]	150	173	1.2
LRR [sensitive, ls]	150	173	32
LRR [sensitive, ls]	174	198	0.00019
LRR [sensitive, ls]	174	198	0.0052

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	1	190	3e-19
Cf-9 [L. pimpinellifolium]	35	197	6e-11
Xa21 [O. sativa]	76	193	6e-11
CLV2 [A. thaliana]	77	195	3e-13
CLV2 [A. thaliana]	78	194	7e-13
CLV2 [A. thaliana]	81	197	3e-12
CLV2 [A. thaliana]	81	190	3e-12
FLS2 [A.thaliana]	81	208	2e-17
FLS2 [A.thaliana]	81	193	4e-13
FLS2 [A.thaliana]	81	196	9e-13
FLS2 [A.thaliana]	81	193	2e-11
FLS2 [A.thaliana]	81	193	5e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	225	247	out -> in

Report for 6213.m00181

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)