Report for 6233.m00125

 > 6233.m00125, length: 1055, copies: 1 

MEELCAYGMRSRIWKESKFGFGGLTGGAPAVRPAASRRSDRWAHGGQTGGYRSWQQAFSAVRLIDLHRLLVSIII

CRDYSISLLGRWFKLRNSTLSRSVEKFAYARNAINSMEIIGIKCCGVVLTPLISLAKQHAAYFFKAQKFVRALKT

ATERLRERVSDVETKVEGAARKGMQPRHEVERWLKRAEHVCVETETIQAKYDKRTKCMGSLSPCICVNYMIAKSA

AANCQAVEKIYSEGIFEEYGVMVPQACTEVPITDISLTGTDRYRNLAVKFIKDEAVSKVGLWGPGGVGKTHLLYQ

INNLFHKNPAFDVVIRVTASKGCSVAKVQDSIVGEQMLQKKNDTESQAVIIYEFLKSKNFLILLDDLWEHVDLDK

VGIPNKVSSIGNYKQKLLLTTRSESVCGQMGVKNGQRIKVDCLDETDAWHLFKENVGTEIIKNHPLVLPLAKEVA

NELAGLPLALIVVGRAMSTKRHPREWQNCIDFLQQSRLNEIEGPVCNEESVFARLKLSYEYLSDTNLKDCFTSCA

LWPDDYLLDRNKLSEYWMGLGLVEEEDIQRCYKAGYARIRELVDKCLLEETDDDRLVKMHDVIRDMALWIVSNEG

RDKNKWVVQTVSHWHAAEQILSVGTEIAELPAISGEQTKLTVLILQDNHLSQSSVTGLCSFISLQYLDLSRNWLK

TFPTEVCNLMNLYYLNLSDNKIKYLPEELGSLFKLEYLLLRSNPIREMPETILSKLSRLQVADFCSFQLEQPSTF

EPPFGVLKCMRNLKALGITINMIKYFNMICKTDLPVRSLCVIILTKYLDEWKGFAFSDSFFGNDLIQKNLSELYI

FTHEEQIVFESNVPHRSSNLEKLYICGHHFTDIFWKGVESQDLFQNLKRLDLITCISLTNISWIQRFPYLEDLIV

FNCEALQQIIGSVSNSDNLPNADEKERKPLSQPCLKRFALIKLKRLTSICHSSFHFPSLECLQVLGCPQLMTLPF

TTVPCNLKAVHCDQEWLEHLQWDDANVKHSFQPFFKVIPMVNEYLPQKFLHGLYAEWSYYRFEEGEFEEAEDGAD

QGLDS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	244	553	2.8e-53
NB-ARC [Pfam fs]	284	553	3.8e-56
LRR [Pfam ls]	663	685	0.035
LRR [Pfam ls]	686	708	0.01
LRR [Pfam ls]	709	732	0.044

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	639	662	0.7
LRR [sensitive, ls]	639	662	16
LRR [sensitive, ls]	663	685	0.0015
LRR [sensitive, ls]	663	685	0.035
LRR [sensitive, ls]	686	708	0.00046
LRR [sensitive, ls]	686	708	0.01
LRR [sensitive, ls]	709	732	0.002
LRR [sensitive, ls]	709	732	0.044
LRR [sensitive, ls]	871	893	1.6
LRR [sensitive, ls]	871	893	36

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	120	1010	3e-92
M [L. usitatissimum]	262	599	2e-13
L6 [L. usitatissimum]	276	620	3e-15
Xa1 [Oryza sativa]	277	968	4e-28
Mla1 [Hordeum vulgare].	278	772	5e-17
Pib [Oryza sativa].	279	735	6e-21
I2 [L. esculentum]	284	970	2e-26
N [N. glutinosa]	284	633	6e-12
RPM1 [A. thaliana]	284	714	3e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6233.m00125

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)