Report for 6233.m00129

 > 6233.m00129, length: 954, copies: 1 

MEIIGIKCSGAILISLIRLSKQYAAYFFKARKRVRALEAATERLRERLSDVETRGVNVETKLDSPMRKGMQRRNE

VEGWLKRAEHVCVETEKIQAKYGKRTKCMGSLSPCICVNYYMIAKSAAANCQAAEKIYSEGMFEEYGVMVPQASS

EVPITDVSLTGTDRYRSLAVKFIRDEAVSKVGLWGPGGVGKTHLLHQINNLFHKNPAFDVVIRVTASKGCSVAKV

QDAIVGEQMLVKKDDTESQAVIIYEFLKSKNFLILLDDLWEHVDLDKVGIPNEVISIGNYKQKLLLTTRSESVCG

QMGVKNGQRIKIDCLDETDAWHLFKENVGTEIIENHPLVLKLAKDVANELAGLPLALIVVGRAMSTKRHPREWQN

CIDFLQQSRLNEIEGPVCNEESVFARLKLSYEYLSDTNLKDCFTSCALWPDDYLLDRNKLSEYWMGLGLVEEEDI

HRCYNAGYARIRELVDKCLLEETDDDRLVKMHDVIRDMALWIVGDEGREKNKWVVQTVSHWCNAERILSVGTEMA

QLPAISEDQTKLTVLILQNNDLHGSSVSSLCFFISLQYLDLSRNWLKTIPSEVCKLVNLYYLNLSDNKIKDLPQE

LGLLFKLQYLLLRSNPIREIPEVILSKLSRLQVADFCSLQLEQPASFEPPFGALECMTDLKALGITVGKIKYLNM

LCKTSLPVRSLCVIIKSKSLDEWKRFAFSDSLFGNDLIQRNLLELYIYTHEEQIVFESNRPHRSSNLEKLYICGH

YFTDVLWEGVESQDLFQNLRRLDLISCISLTNISWVQHFPYLEDLIVYNCEKLQQIIGSTSNNDNLPNTDEKERI

SLSQPCLKRFTLIYLKSLTTICDSSFHFPSLECLQILGCPQLTTLPFTTVPCNMKVIHCEEELLEHLQWDNANIK

HSFQPFFKVISMNNNSAPQNFLDGLYAEWIYHRFEDDELEEIKARWNKDRGLDS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	144	450	8.6e-52
NB-ARC [Pfam fs]	181	450	1.7e-54
LRR [Pfam ls]	560	582	0.0022
LRR [Pfam ls]	583	605	0.024
LRR [Pfam ls]	606	629	0.012

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	536	559	0.53
LRR [sensitive, ls]	536	559	12
LRR [sensitive, ls]	560	582	9.8e-05
LRR [sensitive, ls]	560	582	0.0022
LRR [sensitive, ls]	583	605	0.0011
LRR [sensitive, ls]	583	605	0.024
LRR [sensitive, ls]	606	629	0.00054
LRR [sensitive, ls]	606	629	0.012
LRR [sensitive, ls]	768	790	0.4
LRR [sensitive, ls]	768	790	9.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	44	907	2e-86
M [L. usitatissimum]	159	496	1e-12
Xa1 [Oryza sativa]	174	489	1e-26
Mla1 [Hordeum vulgare].	175	704	7e-19
L6 [L. usitatissimum]	176	496	3e-16
Pib [Oryza sativa].	176	632	3e-21
I2 [L. esculentum]	181	868	1e-27
N [N. glutinosa]	181	530	6e-12
RPM1 [A. thaliana]	181	834	5e-30

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	29	54

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6233.m00129

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)