Report for 6236.m00138

 > 6236.m00138, length: 788, copies: 2 

MWAGSTKGVRVAVAAPPSSPSTAKAFQQQQLHTHGQHRGSSAPSPPHRTPEPVAPVWHLRPHGSTRATVNSWQRW

DGWLQTHNGSGEINGEIHNLNTACIHYLCHGGGGGKSNGRIGVFKESVNLDQEDLELIEEAKLILKKCKGLPLAI

VTIGGFLASRPKTALEWRKLNEHISAELETNLELEAIRAVLNISYDGLPYHLKSCFLYLSIFPQDDKISRKRLVH

DIMREIAISKSKEENLVLRLEGGRRLHNHDTVRHLSITNSSEDWETDVGELKTTVDMSRIRSLTVFGEWRPFFIS

DKMRLLRVLDLEDTKDVRNHHIKQIGELLHLRYLSLRGCMRIAYLPDSLGNLRQLETLDVRDTFILRLPKTITNL

RKLKYLRAIVDKITYEGIAEELPEKNSKKFFSVLAALSRLESLSLLSKGKPGLCGCLDAQEKFSPPKDVKSLKLQ

GNLVELPKWIKQLNNLVKLKLSETMLKDHDAAIQVLGMLPNLTILCLSRESFHSLEGEELNFSEGSFKSLVVLEL

NFSGSKCVKFEQGAFLNLELLLLSVYYEEVETKFSGLEFLQSIKEVQIDGYCPNRKGLKKDLLPPGAESLSLLSK

GEPGLWGCLDADEEFSPPMNLKSLKLQGNLVELPKWIRQLNNLVKLKLSETMLKDHNATIQVLGELRNLTILCLS

REPFHSLEGGELNFSEGSFISLVVLELHFGGSKCVKFEQGAFLNLELLLLSVYYEEVETKFSGLEFLPGIKEVRL

HGEFYARNEQSAPRLKEDLLAQLSENPKKPILKTSGCF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	14	238	1.9e-06
NB-ARC [Pfam fs]	136	238	7.4e-29
LRR [Pfam ls]	330	353	0.31

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	330	353	0.014
LRR [sensitive, ls]	330	353	0.31
LRR [sensitive, ls]	354	376	0.35
LRR [sensitive, ls]	354	376	7.8
LRR [sensitive, ls]	465	490	2.5
LRR [sensitive, ls]	465	490	57
LRR [sensitive, ls]	521	544	2
LRR [sensitive, ls]	521	544	44
LRR [sensitive, ls]	620	641	0.78
LRR [sensitive, ls]	620	641	17
LRR [sensitive, ls]	642	667	0.83
LRR [sensitive, ls]	642	667	19

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pib [Oryza sativa].	89	383	2e-82
I2 [L. esculentum]	131	573	2e-12
Mla1 [Hordeum vulgare].	131	381	7e-29
Pi-ta [Oryza sativa]	132	422	2e-17
RPM1 [A. thaliana]	136	573	4e-24
RPS2 [A. thaliana]	136	381	4e-13
Pib [Oryza sativa].	343	578	1e-32
Pib [Oryza sativa].	593	782	1e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6236.m00138

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)