Report for 6238.m00163

 > 6238.m00163, length: 683, copies: 1 

MATWRSVPRRPTAMEAVAMTAGPCWRLTTEGLRPNLPKPKVQATGSRRRWAAKVESEAIWAKAVTGVPNTVDATK

AAAAARALQIRAEILSTSQPLVPPSCFVTAGNCFDYACRCASQPQPRSTSRSRYGGHAPEHDATLRMLRQIQEQQ

QAYETARQAKVATAPILQYSAGYIPPQVYPAELETNPELEAIRAVLNISYDGLPYHLKSCFLYLSIFPEDDKISR

KRLVRRWCAEGYSRELWDKSAEEIANNYFFELIDRSMILSTQNSTYSSRGADSCQIHDIMREIAILKSKEENLVL

RLEGGRRLHNHDTVRHLSITNSSEDWETDVGELKTTVDMSRIRSLTVFGEWRPFFISDKMRLLRVLDLEDTEGVR

NHHIKQIGELLHLRYLSLRGCMHIAYLPDSLGNLRQLETLDVRASVIVKFDTGINTRDICCLFCCGILPSIAMRL

QGNGVVAPRGLRRLTALHTLGVVDISWQPSILQDIKRLTHLRKLEVTGVNKKNSKKFLSALAALSRLESLSLISK

GKLGLWGCLDAEEKFSPPKDLKSLKLHGNLVELPKWIGKLNNLVKLKLSEIGLKDHDAAIQVLGKLRNLSIHCLP

RKSFHSLEGGELNFSEGSFKSLVVLKLHFGGSKCVKFQQGAFHDLELLVLSGYIEEVGTKFSGLEFLPRIKEVQL

HDYFYDVN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	188	236	7.2e-17
LRR [Pfam ls]	387	410	0.31

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	387	410	0.014
LRR [sensitive, ls]	387	410	0.31
LRR [sensitive, ls]	545	572	1.5
LRR [sensitive, ls]	545	572	34

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	173	423	1e-29
Pib [Oryza sativa].	181	679	1e-118
RPM1 [A. thaliana]	182	669	1e-27
Mla1 [Hordeum vulgare].	183	641	1e-32
I2 [L. esculentum]	192	415	2e-12
Xa1 [Oryza sativa]	192	417	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6238.m00163

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)