Report for 6241.m00127

 > 6241.m00127, length: 189, copies: 1 

MSSNVLSGVVPLGSTKLAETLQWLDLSVNQLTGGIPAEMALFMNLRYLNLYRNDLRTQLPPELGLLHNLTVLDLH

SSGLYGTMPSDLSLGHNSLTGPILVGISELNKLEILRLEYNNLSGIESLLAVNVSHNRLVGRLPASGVFQSLDAS

ALEGNLGIYPAQHIGAAEGQRRRDDSGERAGEHRVKLDQ

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	20	40	6
LRR [Pfam ls]	44	67	0.012
LRR [Pfam ls]	107	129	0.64

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	20	40	0.19
LRR [sensitive, ls]	20	40	6
LRR [sensitive, ls]	44	67	0.00037
LRR [sensitive, ls]	44	67	0.012
LRR [sensitive, ls]	68	92	0.34
LRR [sensitive, ls]	68	92	11
LRR [sensitive, ls]	107	129	0.021
LRR [sensitive, ls]	107	129	0.64

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	1	156	1e-14
FLS2 [A.thaliana]	1	155	6e-12
Xa21 [O. sativa]	1	141	7e-12
FLS2 [A.thaliana]	2	156	1e-11
Xa21 [O. sativa]	2	141	4e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6241.m00127

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)