Report for 6242.m00115

 > 6242.m00115, length: 479, copies: 2 

MTSVRPVTNRSFLSTTRQFINLHVRPSSYNVLLVTVGMKPGIYLTGTNVPSPGASTLAPARDKCLEALILTGWGE

AAPDIKKVFKDMLLELDKTKNKDIHNLVRDEKQLIDELRDFIQNKRFPHARRYIIVIDDIWDIASWSAIRCALVE

NNDGSTIIATTRDFDIAEQIGSPHKLKTLPPKSSKKLFYGRIFGSEDKCPQELVEVSGKILKKCSDVPLAIITIA

IVLARTRNMAEEWYKVYNSIGYGLGNNHDMKNMRKILSLSYHNLPSHLRTCLLYLSIFPEDYEIERSRLIRMWIS

EGFIHPEKDGDNLFELADSYFNELINRSLIQPSGYVSGMLHSCRVHDMIHDLIRSLSSKENFVTVMDGILQQTSP

ASKVRRLSLQNNKLENSTAQTNLKMSQVRSLSIFSSSGVSLLPSLSSFQVLRVLDLENCYLTEGCHLDLRHVCNL

FHLRYLRLYECNFDRELLKEIEKLSFCRR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	3	309	4.7e-25
NB-ARC [Pfam fs]	79	309	4.2e-42

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	378	399	0.66
LRR [sensitive, ls]	378	399	17
LRR [sensitive, ls]	425	451	0.38
LRR [sensitive, ls]	425	451	9.7
LRR [sensitive, ls]	452	475	0.35
LRR [sensitive, ls]	452	475	9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	78	476	5e-80
Pi-ta [Oryza sativa]	78	458	5e-52
I2 [L. esculentum]	79	474	9e-35
Xa1 [Oryza sativa]	79	473	4e-24
RPM1 [A. thaliana]	80	474	2e-47
Pib [Oryza sativa].	95	461	3e-43
RPS2 [A. thaliana]	126	453	3e-20

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6242.m00115

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)