Report for 6256.m00166

 > 6256.m00166, length: 1226, copies: 1 

MAVATGAVMLFLAATLSGVSANTDSDDVNALNVLYTSMNSPSQLTNWVSQNGDPCGQSWLGITCSGSRVTAIKLS

GMGINGTLGYNMNLLTSLVELDTSKNNLGGSDIPYNLPPNLERLNLAENNFTGSIPYSISQMIALRILNLGHNHL

ATTNDMFNQLTNLTTFNLQNNGFNGTIDVLADLPLTDLNVANNQFTGWIPDKLKKIKNLQTNGNSFGSGPSPPPP

PYQSPPYKSPPYKSPQSRQPAPPTTTVNNNPSDDGRKHSKLSGGAIAGIVVCLVVVGAIVAFFVIKKKYWSLPRG

GDPEQKEPLSPIVSGFKDSLKQMKSIKIISTIGKEELQKTVSMNLKPPTRIDLHKSIDENDVTSKSFTRKISFSS

IRTPAYTVADLQVATGSFCADNLIGEGLFGRVYKAKFNDHKVLAVKKINFSAFPGHPSDLFIELVANISRLNHPS

LSELVGYCSEHGQCLLAYEFYRNGSLKDLLHLVDDQSQPLSWNSRVKIALGSARALEYLHETCSPSVIHKNFKSS

NIFLDNELNPHLSDSGFADLIPNRESQVSDEDSGYRAPEVTMSGQYSVKSDVYSFGVVMLELLTGRKPFDRSRPR

SEQSLVGWATPQLHDIDALDQMVDPALQGLYPSKSLSRFADAIALCVQSEPEFRPPMSEVVQLLVRLVQRANMTR

MCGADGHSWRRDGESRDQEPWVCIAVARVQARMVGSKGQRWRRRNKHRGVSALGRSLKPSRKASRHVVPCRARSF

TQCSLGGGSADQEIVIALGSNVGDRISTFDRALRMMKNSGVNITRHACLYETSPAYVTDQPRFLNSAVRGTTKLE

PHELLKKLKEIEKDIGRTDGIRYGPRPIDLDILLYGKSHISTENLTVPHERIHERPFVLAPLVDLLGSSTDDNVE

KSWHSLAKCTGGFFESWDKLGGESIIGTEGIKRVLPVGNRLLDWSERTLVMGVLNLTPDSFSDGGKFQEVEAAIA

QTKLLISEGADIIDIGAQSTRPLARRLSADEELERLVPVLDAITGIPEMEGKLLSVDTFYAEVAAEAVKRGVHIV

NDVSGGQIDPRILEVVAELGVPYVTMHMRGDPSTMQSEQNLLYGDVCKEVASELYKRVRQAELSGIPLWRIVLDP

GIGFSKNSKHNLEVIMGLESIRTEIGKMSLGASHVPILLGPSRKRFLGEICNRVNPTERDAATMVVATAGILNGA

NIVRVHNVKYGVDTAKVSDALSKGRR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	115	138	0.51
LRR [Pfam ls]	139	161	5.4
LRR [Pfam ls]	162	184	1.5
Ser/Thr pkinase [Pfam fs]	393	596	1.1e-30
Ser/Thr pkinase [Pfam ls]	393	666	1e-27

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	115	138	0.025
LRR [sensitive, ls]	115	138	0.51
LRR [sensitive, ls]	139	161	0.26
LRR [sensitive, ls]	139	161	5.4
LRR [sensitive, ls]	162	184	0.072
LRR [sensitive, ls]	162	184	1.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	67	209	1e-10
FLS2 [A.thaliana]	69	675	5e-36
Xa21 [O. sativa]	81	481	4e-11
Rpg1 [Hordeum vulgare]	342	676	3e-21
Pto [L. esculentum]	372	661	2e-43
Rpg1 [Hordeum vulgare]	381	667	4e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
7,8-dihydro-6-hydroxymethylpterin-pyropho	763	891	3e-62
Pterin binding enzyme	953	1210	7.4e-116

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	268	290	in -> out

Report for 6256.m00166

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)