Report for 6273.m00138

 > 6273.m00138, length: 931, copies: 1 

MEGAVFSLTEGAVRSLLCKLGCLLTEDTWLVQGVHGEIQYIKDELECMNAFLRNLTISQIHDDQVRIWMKQVREI

AYDSEDCIDEFIHNLGESSEMGFFGGLISMLRKLACRHRIALQLQELKARAQDVGDRRSRYGVELAKATHEEAHP

RLTRHASLHIDPQLHALFAEEAQLVGIDEPRNELVSWLMEEDLRLRVLAIVGFGGLGKTTLARMVCGSPVVKSAD

FQCCPLFIISQTFNIRALFQHMVRELIQEPHKAMAIAGCKHGLITDDYLEGMERWEVAALTKNLRRYFQDKRYIV

ILDDIWTVSAWESIRCALPDNLKGSRIIVTTRNADVANTCCSRPQDRIYNIQRLSETTSRELFFKKIFGFADDKS

PTDEFEEVSNSVLKKCGGLPLAIVNIGSLLASKTNRTKEEWQKVCNNLGSELENNPTLEGVKQVLTLSYNDLPYH

LKACFLYLSIFPENYVIKRGPLVRRWIAEGFVSQRHGQSMEQLAESYFDEFVARSIVQPVRTDWTGKVRSCRVHD

LMLDVIVSRSIEENFASFLCDNGSTLASHDKIRRLSIHSSYNSSQKTSANVSHARSFTMSASVEEVPFFFPQLRF

FQLKYLSLRNTNVSKLPHLLGNLKHLETLDIRATLIKKLPASAGNLSCLKHLFAGHKVQLTRTASVKFLRQSSGL

EVATGVVKNMVALQSLVHIVVKDKSPVLREIGLLQNLTKLNVLLRGVEENWNAFLESLSKLPGPLRSLSIHTLDE

KEHSLSLDNLAFVESPPLFITKFSLAGELERLPPWIPSLRNVSRFALRRTELHADAIGVLGDLPNLLCLKLYHKS

YADNCIVFCHGKFVKLKLLIIDNLERIEKMQFDAGSVTNLERLTLSFLREPKYGISGLENLPKLKEIEFFGDIIL

SVVTKVASCVKAHPNHPRVIGDKWNIVTEYA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	251	5.5e-12
NB-ARC [Pfam ls]	159	487	4.2e-67
NB-ARC [Pfam fs]	289	487	2.1e-55
LRR [Pfam ls]	602	624	0.065

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	602	624	0.0028
LRR [sensitive, ls]	602	624	0.065
LRR [sensitive, ls]	625	647	0.33
LRR [sensitive, ls]	625	647	7.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	8	865	1e-104
RPM1 [A. thaliana]	23	892	4e-97
I2 [L. esculentum]	38	652	1e-36
Pib [Oryza sativa].	48	366	3e-21
Pi-ta [Oryza sativa]	62	720	4e-80
L6 [L. usitatissimum]	167	461	5e-13
Pib [Oryza sativa].	169	893	7e-88
M [L. usitatissimum]	170	461	1e-14
N [N. glutinosa]	174	461	6e-11
RPS2 [A. thaliana]	174	855	2e-27
Xa1 [Oryza sativa]	195	658	1e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6273.m00138

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)