Report for 6273.m00139

 > 6273.m00139, length: 989, copies: 1 

MEGAIVSLTEGAVRGLLRKLAGVLAQESSPAQRVHGEVQYIKDELESMNAFLRSVSTSPEDAAGHDDQVRVWMKQ

VREIAYDAEDCIDVFVRGRSHPAAAAGDEGRLVASLRRFVRLLAGALGVGGGDRSVAAQLRELKARARDAGERRT

RYGVSLAAAAVRGGGGSSSSGRLDPRLHALFTEEAQLVGIDGPREELVGWVMEEEPRLRVLAVVGFGGLGKTTLA

RMVCGSPRVKGAADFQCSPPLVVVSQTFSITALFQHLLRELIQRPRKAMAAVAAAGGGGGDLVAYDALQGMERWE

TAALASKAEGIPARQKFVHICGTITLYRYIVILDDIWSSSAWESIKCAFPDNKKGSRIIVTTRNEDVANTCCCRP

QDRIYKIQRLSDAASRELFFKRIFGMADAGAPDDDELKQVSDSILKKCGGLPLAIVSIGSLLASKPNRSKEEWQK

VCDNLGSELESNPTLEGTKQVLTLSYNDLPYHLKACFLYLSIFPENHVIKRGPLVRMWIAEGFVTQRHGLSMEQV

GERYFDEFVSRSMVHLVRIDWSGKVRSCKVHDIMLEVIVSKSLEENFASFFCDNGTELVSHDKIRRLSIRSSSYS

SAQRTSNSVAHVRTFRMSPSIDNIPFFFPQLRLLRVLDMQGSRCMSNKNLDCICRFFQLKYLSLRNTSVSILPRL

IGNLNHLETLDIRETLIKKLPSSAANLTCLKHLLAGHKEQLTRTSSVKFLRPSSGLKMSHGVIRNMAKLQSLVHV

EIKEHPSVFQEIALLQNLRKLSVLFYGIEVNWKPFLELLNMLSGSVRSLSIDIFDAQGNISISSLEMLSSLVSPP

IFITSFSLTGKLGSLPPWVASLRSVSRLTLRRSQLRADAIHVLGGLQNLLCLKLYHKSYADDRLVFPQGGFARVK

LLIDDNLVNLEKLHFNEGSMPNLERLTLSFLREPKDGISGLNNLLKLKEVEFFGNIVSSVVSKVVSCVKDHPNHP

RVVGDKWNIVTVYN

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	172	266	1.9e-11
NB-ARC [Pfam ls]	172	519	8.8e-55
NB-ARC [Pfam fs]	328	519	1.4e-51
LRR [Pfam ls]	658	680	5.8
LRR [Pfam ls]	681	703	1.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	658	680	0.25
LRR [sensitive, ls]	658	680	5.8
LRR [sensitive, ls]	681	703	0.072
LRR [sensitive, ls]	681	703	1.7
LRR [sensitive, ls]	849	872	4
LRR [sensitive, ls]	849	872	93
LRR [sensitive, ls]	946	969	2.2
LRR [sensitive, ls]	946	969	51

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	1	708	1e-75
Mla1 [Hordeum vulgare].	6	977	1e-91
RPM1 [A. thaliana]	19	964	6e-81
Pib [Oryza sativa].	52	371	1e-13
Pib [Oryza sativa].	182	951	5e-87
I2 [L. esculentum]	183	843	2e-35
RPS2 [A. thaliana]	187	699	1e-24
Xa1 [Oryza sativa]	208	710	6e-25

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6273.m00139

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)