Report for 6273.m00140

 > 6273.m00140, length: 954, copies: 1 

MEGAIFSVAEGTVRSLLSKLSSLLSQESWFVRGVHGDIQYIKDELESMNAFLRYLTVLEDHDTQVRIWMKQVREI

AYDAEDCIDQFTHHLGESSGIGFLYRLIYILGKLCCRHRIAMQLQELKARAQDVSERRSRYEVMLPKTTLQGAGP

RLTRHASRHLDPQLHALFTEEAQLVGLDEPRDKLVRWVMEADPCRRVLAIVGFGGLGKTTLARMVCENPMVKGAD

FHCCPLFIVSQTFNIRTLFQYMIRELIQRPNKAMAVAGGKHGHTMDGNMDGMERWEVAVLAEKVRQYLLDKRYIV

IFDDIWTISAWESIRCALPDNKKGSRVIITTRNEDVANTCCSGPQDQVYKMQRLSDAASRELFFKRIFGSADISS

NEELDEVSNSILKKCGGLPLAIVSIGSLVASKTNRTKEEWQKICDNLGSELETNPTLEVAKQVLTLSYNDLPYHL

KACFLYLSIFPENYVIRRGPLVRRWIAEGFVNQRHGLSMEEVAESYFDEFVARSIVQPVKIDWSGKVRTCRVHDM

MLEVIISKSLEENFASFLCDNGHPLVCHDKIRRLSIHNSHNSVQRTRVSVSHVRSFTMSASVEEVPMFFPQMRLL

RVLDLQGSSCLNNSTLNYICKFYQLKYLTLRKTNIGKLPRLIGNLKYLETLDIRATRIKRLPASASNLSCLKHLL

VGHKVQLTRTTSVKCFRPDSGLEMTAGVVKNMMALQSLAHIVVKERPAVLSEIGQLQKLQKLNVLFRGVEENWNA

FLQSLVKLTGSLRSLSIHILDEKEHSSSLEYLALIAESPPLFIRNFSLKGKLQRLPPWIPSLRNVSRITFRDTGL

HAEAIGVLGDLPNLLCLKLYQRSYADDHIFFAHGNFLKLRMLVIDNMENIRNVHFEKGSVPNLEWLTIAFLQEPK

DGITGLENLLKLKEIEFFGDIILSMVTKVASCMKAHPNRPRVIGDKWNNVTEYA

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	159	251	6.2e-12
NB-ARC [Pfam ls]	159	486	3.5e-68
NB-ARC [Pfam fs]	281	486	1.9e-56
LRR [Pfam ls]	624	646	1.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	624	646	0.063
LRR [sensitive, ls]	624	646	1.5
LRR [sensitive, ls]	647	669	0.67
LRR [sensitive, ls]	647	669	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	1	674	1e-88
RPM1 [A. thaliana]	8	915	1e-98
Mla1 [Hordeum vulgare].	8	942	1e-111
Pib [Oryza sativa].	48	428	4e-24
Pib [Oryza sativa].	169	916	1e-89
RPS2 [A. thaliana]	174	787	7e-31
I2 [L. esculentum]	197	739	1e-39
Xa1 [Oryza sativa]	197	751	1e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	117	137

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6273.m00140

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)