Report for 6277.m00140

 > 6277.m00140, length: 697, copies: 1 

STQTSLLEEVLRIMKIRYGKAKSVEELQNKLKSAIKEKCFFLVLDDVWESNAWTNSLQKPLHAAAKGIVIVTTRN

EKVAQEIKVDHTHQVHLMSENVGWDLLWKSMGITEEKQVHHLRDIGIEIVHQCGYLPLAIKIIAKVLISKEKTND

EWKRILSNNSWSMNNLPDELRALYLSYSELSHQLKQCFLYCAIYPEHSTINRDDLTSMWVAEGFIDEQKDQLLED

TAVEYYNELIHWNLLQLDLSYFDLGGCKMHGLLRQLVCYLSREECFVGDPESQNGNTMSKMRRVSVVTEKDTVVL

PSMDKKQYKVRTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHIGNLIHMRLINLDGTNISCLPESVG

NLQNLQVLNLQRCKSLYRLPLATTKLCNLRRLGLLDTPINKVPKGIGRLQFLNDLEGFPIGSVTYNKKMQDGWNL

EDLADLSQLRRLVMLPNLERLKIVKATAITKIGPEFIGQFPRSREAVAFPKLEWLIINDMPNWEEWAFIEEDEIS

LAAMNEGGGDGTAVAEEEEISLAAMNEGGEDGTTVTEKGEASFPRLCVLPSLKRLDIDNCPKLRALPQQLGHEAT

SLKELSLVAASCLKSVKDLPSLSGFLSVCRCEGLERVTELPKVRKLFVSVCPNLSCVEELGSLEQLWLDVNMEDS

SPWVHGLREQYRHLDVYTWPRE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	1	220	9.8e-13
NB-ARC [Pfam fs]	26	220	8.5e-43
LRR [Pfam ls]	333	355	0.48
LRR [Pfam ls]	356	378	1.7
LRR [Pfam ls]	576	600	4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	169	192	6.7
LRR [sensitive, ls]	169	192	73
LRR [sensitive, ls]	243	266	5.9
LRR [sensitive, ls]	243	266	65
LRR [sensitive, ls]	333	355	0.044
LRR [sensitive, ls]	333	355	0.48
LRR [sensitive, ls]	356	378	0.15
LRR [sensitive, ls]	356	378	1.7
LRR [sensitive, ls]	379	402	0.84
LRR [sensitive, ls]	379	402	9.2
LRR [sensitive, ls]	403	425	3.3
LRR [sensitive, ls]	403	425	36
LRR [sensitive, ls]	467	491	1.7
LRR [sensitive, ls]	467	491	19
LRR [sensitive, ls]	576	600	0.36
LRR [sensitive, ls]	576	600	4
LRR [sensitive, ls]	642	664	4
LRR [sensitive, ls]	642	664	44

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	2	407	3e-35
Mla1 [Hordeum vulgare].	3	453	6e-44
Pi-ta [Oryza sativa]	4	471	4e-26
I2 [L. esculentum]	23	471	3e-42
Xa1 [Oryza sativa]	23	657	9e-29
Pib [Oryza sativa].	26	405	5e-25
RPS2 [A. thaliana]	30	411	2e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6277.m00140

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)