Report for 6277.m00145

 > 6277.m00145, length: 1031, copies: 1 

MAAVLDALIVSCIKKLQFIITDKAILILGVEDELEELQRRTDVIRSSLQDAEARRMEDSAVEKWLDQLRDVMYDV

DDIIDLARFKGSILLADHPPSSSRKSTACSGLSLSSCFSNIRIRHEVAVKIRSLNKKIDNISKDEVFLKLNRRHH

NESGSAWTPIESSSLVEPNLVGKEVIRACREVVDLVLARKKKNVYKLAIVGTGGVGKTTLAQKIFNDKKLEGRFD

HHAWACVSKEYSRDSLLRQVLRNMGIRYEQDESVPELQRKIKSHIANKSFFLVLDDVWNSEAWTDLLSTPLHAAA

TGVILITTRDDTIARVIGVEHTHRVDLMSADVGWELLWRSMNINQEKQVQNLKDIGIEIVRKCGGLPLAIRVIAT

VLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPHQLKQCFLYCALFPEDETILRDILTRMWVAEGF

IDEEKGQLLEDTAERYYYELIHRNLLQPDGLYFDHWSCKMHDLLRQLACYLSREECFVGDVESLGTNTMCKVRRI

SVVTEKDMMVLPSINKDQYKVRTYRTSYQKALQVDSSLFEKLTYLRVLDLTNSHVQRIPNYIENMIHLRLLDLDG

TDISHLPESIGSLQNLQILNLQRCKSLHRLPLATTQLCNLRRLGLAGTPINQVPKGIGRLKFLNDLEGFPIGGGN

DNTKIQDGWNLEELAYLPQLRQLGMIKLERGTPRSSTDPFLLTEKKHLKVLNLDCTEQTDEAYSEENARNIEKIF

EKLTPPHNLEDLFVGNFFGCRFPTWLGCTHLSSVKSVILVDCKSCVHLPPIGQLPNLKYLRINGASAITKIGPEF

VGCWEGNLRSTEAVAFPKLEMLIFKEMPNWEEWSFVEEEEVQEEEAAAAAKEGGEDGIAASKQKGEEAPSPTPRS

SWLLPCLKQLQLVECPKLRALPPQLGQQATNLKKLFIRDTRYLKTVEDLPFLSGCLLVERCEGLERISNLPQVRE

LRAGGCPNLRHVEELGGLEQLWLSKNMQKISSLWVPGLEEQHRQLHGDEHKLEVNE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	155	456	8.3e-67
NB-ARC [Pfam fs]	191	456	3.2e-67
LRR [Pfam ls]	569	591	2.4
LRR [Pfam ls]	592	614	0.03
LRR [Pfam ls]	639	661	4.2

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	569	591	0.22
LRR [sensitive, ls]	569	591	2.4
LRR [sensitive, ls]	592	614	0.0028
LRR [sensitive, ls]	592	614	0.03
LRR [sensitive, ls]	615	638	0.94
LRR [sensitive, ls]	615	638	10
LRR [sensitive, ls]	639	661	0.38
LRR [sensitive, ls]	639	661	4.2
LRR [sensitive, ls]	783	805	6.4
LRR [sensitive, ls]	783	805	70
LRR [sensitive, ls]	806	830	0.73
LRR [sensitive, ls]	806	830	8
LRR [sensitive, ls]	906	930	1.6
LRR [sensitive, ls]	906	930	17
LRR [sensitive, ls]	931	953	2.6
LRR [sensitive, ls]	931	953	29
LRR [sensitive, ls]	972	994	1
LRR [sensitive, ls]	972	994	11

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	793	7e-61
RPM1 [A. thaliana]	13	750	2e-59
I2 [L. esculentum]	34	1015	9e-91
Pib [Oryza sativa].	43	331	4e-11
Pi-ta [Oryza sativa]	58	664	4e-43
Xa1 [Oryza sativa]	121	854	2e-49
RPP5 [A. thaliana]	133	985	4e-15
Pib [Oryza sativa].	167	847	8e-41
N [N. glutinosa]	169	664	3e-12
RPS2 [A. thaliana]	181	631	5e-41

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	30	54

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6277.m00145

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)