Report for 6277.m00146

 > 6277.m00146, length: 1032, copies: 1 

MATILDSLIGSCAKKLQEIITEEAILILGVKEDLRELQEKMEQIRCFISDVERRGMEDSSIHNWISRLKDAMYDA

DDIIDLVSFEGSKLLNGHSCSPRKTIACNGLSLLSCFSNIRVHHEIGNKIRSLNRNLEEIAKDKIFVTLENTQSS

HKDSTSELRKSSQIAESNLVGKEILHASRKLVSQVLTHKEKKTYKLAIIGTGGIGKTTLAQKVFNDEKLKQSFDK

HAWICVSQDYSPASVLGQLLRTIDAQCKQEESVGELQSKLESAIKDKSYFLVLDDVWQSDVWTNLLRTPLYAATS

GIVLITTRQDTVAREIGVEEPHHIDQMSPAVGWELLWKSINIEDEKEVQNLRDIVIEIVQKCGGLPLAIKVIARV

LASKDKTENEWKKILANYVWSMDKLPKEIRGALYLSYDDLPQHLKQCFLYCIVYPEDWTIHRYYLIRLWVAEGFV

EVHKDQLLEDTAEEYYYELISRNLLQPVDTSFDQSKCKMHDLLRQLACHLSREECYIGDPTSLVDNNMCKLRRIL

AITEKDMVVIPSMGKEEIKLRTFRTQPNPLGIEKTFFMRFTYLRVLDLTDLLVEEIPDCVGYLIHLRLLDLSGTN

ISCLPKSIGALKNLQMLHLQRCESLYSLPSMITRLCNLRRLGLDDSPINQVPRGIGRLEFLNDLEGFPVGGGSDN

TKMQDGWNLQELAHLSQLRRLDLNKLERATPRSSTDALLLTYKKHLKSLHLCCTEPTDEAYSEEGISNVEMIFEQ

LSPPRNLEDLMIVLFFGRRFPTWLSTSLLSSLTYLKLKDCKSCVHLPPHNRTATNLKYLRIDGASAITKIGPEFV

GCWEGNLISTETVAFPRLELLAIKDMPNWEEWSFVKEEELQEEKAAAAAQEGGKDGTAASKQKGEEAPSPTPRSS

WLLPCLKQLQLVECPKLRALPPQLGQQATNLKELDIRRARCLKMVEHLPFLSGILFVQSCQGLEIISNLPQVREL

LVNHCPNLRHVEMLGGLEQLWLSKNMQKISSLWVPGLEEQHRQLHGDEHKLEVNEWF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	153	455	3.4e-63
NB-ARC [Pfam fs]	196	455	3.3e-65
LRR [Pfam ls]	590	612	0.011

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	567	589	2.9
LRR [sensitive, ls]	567	589	32
LRR [sensitive, ls]	590	612	0.00096
LRR [sensitive, ls]	590	612	0.011
LRR [sensitive, ls]	613	636	1.1
LRR [sensitive, ls]	613	636	12
LRR [sensitive, ls]	637	659	0.61
LRR [sensitive, ls]	637	659	6.6
LRR [sensitive, ls]	781	801	4.7
LRR [sensitive, ls]	781	801	51
LRR [sensitive, ls]	805	829	0.84
LRR [sensitive, ls]	805	829	9.2
LRR [sensitive, ls]	905	929	1.6
LRR [sensitive, ls]	905	929	17
LRR [sensitive, ls]	930	952	4.6
LRR [sensitive, ls]	930	952	50
LRR [sensitive, ls]	971	993	2.2
LRR [sensitive, ls]	971	993	25

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	761	4e-63
RPS2 [A. thaliana]	5	726	1e-43
RPM1 [A. thaliana]	15	788	1e-59
I2 [L. esculentum]	34	1005	9e-89
Pi-ta [Oryza sativa]	58	664	1e-38
Xa1 [Oryza sativa]	120	797	2e-49
Pib [Oryza sativa].	166	795	2e-44

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6277.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)