Report for 6278.m00138

 > 6278.m00138, length: 590, copies: 1 

MVSLPGRLEELVRRHGSKLPKGAEEEISLIKQDLEKIISVLHGHSEPKLEGQAMVVRCWMKEVRELSYDIEDCID

HYEHASAWSSIHRSKITRRRWSWTRGKRTPRLPERLKQRLWMANKIREFSTRSQEALQRHAMYNNLSGIASTAAS

SPCDASSSSSWHPGQDGKENGKVGIDSSVPMLKGWLTDGEKLKVVSIVGVGGVGKTTLANELYRKLQWQFECRAF

VRTSQKTDMRRILISMLSQVRPQQPPDNWKVNVRCTYTPGRSARGRRGRRNKPRHPVPLLPSTTSPPPEPPELRR

ARSGRCSPRCRRRARAPPSSSTSPPWPEPALPAAARTAAAGRSLPHSWSSRLERQQDGAEGIAPASWEAAAGVQI

RRREARIRAPHGRICCSGRQVGSPGGVVGVAGGGAEHETPGGRRRRRGWRRAGGGVGVDEVLAAACRLLATPAGG

GRGRGRRCRGGLGDEVARSTSPAQTQRHSGACCSGGEAAGCGYVEERATPVWRRRRCLWRLAVAVAVAAAAAAAV

AAMTTTAAAAVARWKEARWWCVSVAAAAVAVIVVTGDMTASTASRGRGRRLHLAGAASFGGGVGD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	173	248	6.8e-13

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Pi-ta [Oryza sativa]	17	257	5e-30
Mla1 [Hordeum vulgare].	18	242	1e-14
Pib [Oryza sativa].	40	249	5e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	515	537	out -> in
putative TM domain	544	566	in -> out

Report for 6278.m00138

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)