Report for 6278.m00149

 > 6278.m00149, length: 2861, copies: 1 

MFNLPRRLEELLCHHGSMLPKGADEEIPLIKQDLEEIISILHGHSEPKLEDHSMVVRCWMKEVRELSYDIEDSID

QYEHAARSQNRPNIHHRKFNRWRGNKIPCIPQKLKQRLWMANKIREFSLRIQDALQRHAMYNNLGGVAGTASTTR

GDVCSATPWHPTKTQFREHVDNVRSVSIDVDGMEAALNDLNKLKNLLAGIPTASLVQFREHADKVRGIHTDIEAI

LNKLENIPPGITTTTTTTTRGDAFMESTCHVGIGAAMNKLENLLDLCGEEKLKVVSIVGVGGVGKTTLANKLYRK

LRWQFECRAFVRTSQKTDMRRLLINILLQIRSHQSPDNWKVHSLISSIRTYLQDKRGCVCCLLSLISALATIRPH

LAKDIPPIKGFLIVIDDLWATSTWDIIKCALPEGNKSSRILTTTEIEDLALQSCSYDLKFIFKMIPFGEDDSRKL

LFSIVFGSHSKCPPEVSETLYDIVRKCGGLPLAIVTVASLLASQLDKLEQWDYINKSLGYSLMANPTLEGMKQLL

NLCYNNLPQHLKACMLYLSMYQGDHIIWKDDLVNQWIAEGFICATEEHDKEEISRGYFDELVGRKIIQPVHIDDS

GEVLSCVVHHIVLNFVTYKSIEENFIIAIDHSQATIRFADKVRRLSIHFNNVEDAPPPTNMRLFQVRTIAFFGVL

KYMPFIMEFRLIKVLFLHFLGDEDSTGIVDLTKISELVRLRYLKVTSNATVKLPTRLQGLPYLETLKIDGKISEV

PTDIYLPGLLHLTLPAKTNLPSGIVHMTSLRTIEYFDLSCNSAENLWSLGELSNLRDLQLTYSEIHSDNLKDNMK

YLGSILGKLRNLTSITLSPPGSSCPDTLHIDRDTKTRINVDGWSSVSSPPALLQRFELLPCVCIFSNLPNWIGQL

GNLCILKIGIREVTSNNIDVLGVLPELTVLSLYVHTKPAERIVFDNAGFSILRYFKFICSVAWMKFEVGAMPSLR

KLKLGFDVHRADQHDIIPVGIEHLSGLEEISAKIRVASTAHDHCRRFAESALTNAIRMHPGRPSVNIRCVDWTFD

GMDVSNAGTREGECRILKKQQNIVKESSTEKSAVLEKDRGDGANKSDESRWPSSVDPRTVTAKSDTFLVACVPLA

ACNEAGCKGMRLAGRQAAFMVACGHDSGQGLLDLAFPCSDSLVADGYSYANCYVVRDCLVELLATGDSREKLPME

MWHVRSNTEDDGLSWSKYEQKEILGAKFPRAYFRCTHWNTKKGCMATKEVQRDDGDPLMFDIVYHGEHTCTQTAE

SNVDEQIRLTRTRDKKVKRTKRKRQVRVTSVPADDGYSWRKYGQKNVLGFSYLRGYYRCATKGCQASKQVQRHDD

GLLFDVTYFGEHTCADQPQAAHSSDQVQVTLWPPASTILERPTFKTRLQGQVDAMEKQHEGFRKMLSSIQEAIGA

MSVKQGEVQETMNKMEKSISSWRPQVDAAVQSLQRDMELQRNQVGAVERHQAEADKSSNTSQALEEREEIARRTS

QLPTSPTMSLPVSQALEEREEIARRAPLLPTPPTASMPASTGEIGLDGHRISTQFRGRASGVVTTLVPPPGKGTH

SLPFSPRVHPNFSEFVGREESGGSEGRGYNHRLPKLDFPQFDGSDPQNWRLRCEHYFGVYGTHPDLWVRVATIYF

IGRAASWLRSSRAHLLCGNWGVFCDTVDRKFDRNRHLQLVRQIDQLKQLGSVNEYYERFDDLWSQLLVYDPTLST

VNFFPSLVSKDGKKLGDHAARIKSAYPLPLPPPKFVHAGKGDDKRTAEVPKVANSSDKLVALKAYRRAQGLCYVC

AEKWSPTHKCSGSVQLHAVQELFSVLAADVSEGEQDADSTSSLMAISLQAIQGTVSAHTLRLQGSIQGFDVLILV

DSGSSCSFLSSVVLPHLTGVKSLLTPVQVKVANGAVLSCTSELPAAKWEVQGHQFSTDFKLLPLDNYDMILGMDW

LEKYSPMDINWQAKTIQFGLHDKSVELKGVVPELDKCDLVSIHQLQLLHNQGAVESLVQLTASDGSSSSQNVPSS

IQSILDEFADIFNEPDGLPPSRSYDHTIPLIAGAQPVNIRPYRYTPDQKNEIEKQVQEMLKKDLRSGYHQIRMAP

QDEHKTAFKTHNGHFEFRVLPFGLTSAPATFQGVMNSVLAAQLRQSVLVFVDDILVYSRSLEEHKNHLRQVLSTL

THHQLKEAFVALKTALIEAPVLALPNFQQPFVVETDASDKGIGAVLMQNGHPIAFLSKALGPRTQGLSTYEKESL

AIMLAIDHWRSYLQHDEFVIRTDHRSLSFLTNQRLSTPWQQKALTKLLGLRYKICYKKGLENGAADALSRRQSDG

LEEVSAISICLPDWLQELIDGYQSDSEAQKLLQALSVSGAGPSNFEVQNGILYFKHRIWIGHNKLLQQKILANLH

TAAVGGHSGILVTYQRVKQLFSWPGMRKDVQEFVQHCDICQRAKSEHVKYPGLLQPLEVPSQSWQVITMDFIEGL

PKSASFDCILVIVDKFSKFAHFLPLKHPFTAFGVAQLFMEHIHSIHGLPQAIVSDRDRVFTSSLWKELFRRAGTQ

LRMSSSYHPQSDGQTERVNQCVEMFLRCFVHSCPSRWKHWLALAQYWYNTSFHSALGMTPFEVLFGHKPRYFGLS

TSSVDAPGDLATWLSERNDMNTLIHHHLLRAQQRMKSQADLKRSERCFVVGDWVFMKLQPYIQQSFMTRSNRKLS

FKYYGPFQVLQRIGSVAYRLQLPAHSLIHPVVHVSQLKKALAPSEAVQPSLPVLNPDAGHLAIPIKILDHCSIRR

GSKMIKQVLIRWSGVSSSADTWESLDEMQAKFPAAPAWGQAETQGGRNVTASIQSTTHNSSIIGPRRSKREVHTN

PKYMGCDWVTG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	238	572	8.9e-35
NB-ARC [Pfam fs]	256	356	2.8e-12
NB-ARC [Pfam fs]	386	572	2.8e-28

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Retrotransposon gag protein [fs]	1644	1716	1.1e-09
Reverse transcriptase (RNA-dependent DNA polymerase) [ls]	1989	2201	7.3e-08
Reverse transcriptase (RNA-dependent DNA polymerase) [fs]	2088	2181	7.1e-21
Integrase core domain [fs]	2459	2615	1.9e-33
Integrase core domain [ls]	2459	2615	9.2e-33

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	171	1043	1e-80
RPM1 [A. thaliana]	229	1005	4e-39
Xa1 [Oryza sativa]	230	857	5e-23
Pib [Oryza sativa].	256	1020	2e-47
Pi-ta [Oryza sativa]	256	830	1e-137
I2 [L. esculentum]	263	979	6e-35
RPS2 [A. thaliana]	265	743	2e-16
Pi-ta [Oryza sativa]	889	1054	1e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
WRKY DNA -binding domain	1209	1272	5.4e-24
WRKY DNA -binding domain	1308	1366	1.6e-27
Reverse transcriptase (RNA-dependent DNA pol	1989	2201	1e-07
Integrase core domain	2459	2615	1.3e-32

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6278.m00149

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)