Report for 6278.m00150

 > 6278.m00150, length: 1095, copies: 1 

MESAAATAFLKTVMGRLFMALEKEYNKHRGLAQESHSLQQDLRMIAAAMDDQQLSMGRSDAAARTAVARLYTEEM

LDLAHDIEDCVDRFLHRLTCNHHKRGGAGAGASLLRRVTHELSKVKSRSSFGDEIQKLKKRLREAHQRVLTINPP

PILIAGGSSSSAAVAPPCRAARSPVGIGEDVEELLSMLDEVEGEPVQMRVISVVGFGGLGKTTLAKAVYDEPRAK

DKFRHRAWVAAGGSPEIRGILRDVLQQVRPDDAMDVDGQRLEASFKDYLKDKRYLIVIDDIGMDQWSIIRSAFED

NGTSSRIILTTTIQSVANMWADPEMGQGPGRSMEISAQRKVYMVKGGPIDFFLVKKHTSLMGLPSQAPGRGPACP

GSGSAPCSHGSGYVYQMNTLGEDDSKKLAFPGFRSPELEQGSASLLGKCDGLPLALVSVSDYLKSSSEPTGELCA

KLCRTLGSHLKEKHGHDNFSELRKVLLDNYDSLSGYALSCLLYLGIFPSNRPLKKKVVIRRWLAEGYARSDSLRS

EEDIADENFSKLIDRHIIQPIDTRNNSEVKTCKTHGIMHEFLLNKSLTQRFIATSSHDHPRLGINTTNARHLSVH

AGELRECVTSDEELSRVRSLTIFGDASDAISYFRKCKLIRILDLQEWNNLDDDHLKHICKLWHLKYLSFGGNISE

LPRSIEGLHCLETLDLRRTEIKFLPIEAIMLPHLAHLFGKFMLQCLETLDLRRTEIKFLPIEAIMLPHLAHLFGK

FMLHKDDLKNVNKSKLQKFFSSNKSNLRTLAGFITDEGKGFLQLVGHMKKLRKVKVWCKHVAGSSNYIADLSRAI

QEFTRTPIDRDSDRSLSLDCEECSENFLSSIDLEPCSEDSKYHLRSLKLHGKLLRLPPFVTSLSGLTELCISSAI

LTQDHLSALIKLNRLLYLKLIADKLENIEIKIGAFPSLRRLCFVMKIMTSALTTIEQGALSNLVSLQLLCQGLVG

LSGIEIRHLKHLKEITIDSAVTVQTRQDWEQAAKNHPNRPRVLLFRKVDPMESEEPEKPCAIGEKRKLSVAQPTG

SDGGLDSSLKKMRLSEPSSSRLQVIVHPVVVTATEAAPQHSFANL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	158	523	9.3e-13
NB-ARC [Pfam fs]	175	319	5.1e-18
NB-ARC [Pfam fs]	423	523	1.9e-07

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	663	684	1.1
LRR [sensitive, ls]	663	684	13
LRR [sensitive, ls]	685	708	0.67
LRR [sensitive, ls]	685	708	7.3
LRR [sensitive, ls]	720	743	0.67
LRR [sensitive, ls]	720	743	7.3
LRR [sensitive, ls]	890	913	6.4
LRR [sensitive, ls]	890	913	70

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	6	318	2e-14
Mla1 [Hordeum vulgare].	7	318	6e-28
Pi-ta [Oryza sativa]	38	709	5e-48
Xa1 [Oryza sativa]	122	691	2e-14
Pib [Oryza sativa].	175	1009	3e-48
I2 [L. esculentum]	176	328	9e-19
Mla1 [Hordeum vulgare].	377	761	2e-32
RPM1 [A. thaliana]	390	973	4e-21
I2 [L. esculentum]	411	820	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6278.m00150

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)