Report for 6303.m00165

 > 6303.m00165, length: 218, copies: 1 

MAPRVSLLAAGAVAVAVVLLLAAPARASNDEGDALYALRTRLSDPNGVLQSWDPTLVNPCTWFHVTCDHASRVVR

LDLGNSNISGSIGPELGRLVNLQYLELYRNNLNGEIPKELGNLKNLISLDLYANKLTGTIPKSLSKLGSLRFMRL

NNNKLAGSIPRELAKLSNLKVIDLSNNDLCGTIPVDGPFSTFPLRSFENNNRLNGPELQGLVPYDFGC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	72	95	2.8
LRR [Pfam ls]	96	119	0.0017
LRR [Pfam ls]	120	143	0.052
LRR [Pfam ls]	144	167	0.75
LRR [Pfam ls]	168	201	1

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	72	95	0.091
LRR [sensitive, ls]	72	95	2.8
LRR [sensitive, ls]	96	119	5.4e-05
LRR [sensitive, ls]	96	119	0.0017
LRR [sensitive, ls]	120	143	0.0017
LRR [sensitive, ls]	120	143	0.052
LRR [sensitive, ls]	144	167	0.024
LRR [sensitive, ls]	144	167	0.75
LRR [sensitive, ls]	168	201	0.033
LRR [sensitive, ls]	168	201	1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	20	184	1e-22
FLS2 [A.thaliana]	21	217	2e-22
CLV2 [A. thaliana]	34	184	1e-13
FLS2 [A.thaliana]	42	206	3e-15
Xa21 [O. sativa]	66	185	3e-16
FLS2 [A.thaliana]	69	184	1e-18
FLS2 [A.thaliana]	69	206	7e-16
Xa21 [O. sativa]	69	185	3e-13
Xa21 [O. sativa]	70	217	1e-17
Cf-9 [L. pimpinellifolium]	71	183	3e-12
FLS2 [A.thaliana]	71	184	2e-15
FLS2 [A.thaliana]	71	186	6e-15
Xa21 [O. sativa]	71	193	7e-17
CLV2 [A. thaliana]	72	191	3e-16
CLV2 [A. thaliana]	73	185	3e-16
FLS2 [A.thaliana]	73	182	2e-15
FLS2 [A.thaliana]	73	205	1e-14
CLV2 [A. thaliana]	76	211	4e-13
CLV2 [A. thaliana]	76	184	2e-12
FLS2 [A.thaliana]	76	201	2e-18
FLS2 [A.thaliana]	76	217	6e-17
FLS2 [A.thaliana]	76	184	9e-16
FLS2 [A.thaliana]	76	184	2e-13
FLS2 [A.thaliana]	76	186	3e-13
FLS2 [A.thaliana]	76	217	4e-13
FLS2 [A.thaliana]	76	217	5e-13
FLS2 [A.thaliana]	76	184	1e-11
Xa21 [O. sativa]	76	208	3e-13
FLS2 [A.thaliana]	81	184	1e-13
Cf-9 [L. pimpinellifolium]	100	211	3e-14

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out

Report for 6303.m00165

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)