Report for 6321.m00114

 > 6321.m00114, length: 1080, copies: 1 

MAAAAAMSTIPRTPAVTAASLPPAAGSRSSCGGVVGVRVPNLHRQRFPRPRSSAPWASSRSSIRILIIILRARSV

SPRSGLNRFVESFDKFDVQGIVMEEAILILGVDEELKELQRRMKQIQCFLHDAEQRRIEEEAVNNWLGELKNAIY

DADDIIDMAKFEGSKLLANHSSLSPLPIKYISCCNLSVTSCVRNVWTHRKIALQIRRVNYNLQRISIDKTFLALE

NVKATYRVLAPSKRHTSHLVEPNLVGKEIKYATSRLVEMILTHREEKAFKVAIVGTGGVGKTTLAQNIYNDQRVK

GNFSKHAWICVSQEYSEVNLLKELLRNMGVHERQGETVGELQSKLASTIKDESLFVVLDDVWQSEVWTNVVRTPF

HDAAKATILVTARDELVVRRVGAEHLHRVEMMSTDVGWELLWKSMNIKEEKEVETLQHIGTKIVSKCGGLPLAIK

VIASVLATKEKTKNTWEKVIESSAWSMSKLPAELRGALYLSYDDLPHNLKQCFLYCALYVEGQMMHHADLVRFWV

AEGFVEEQEGQLLEDTAEEYYHELICRHLLEPDPFYFDHYRCKMHDLLRYLAQHLSREECYFDQLPLEPTTWSKL

RRISIVNKTDMLSSVVEKGHCRVRTLMFCMSPNIDSDVFMRFPHLRVLDLTGSIVQRIPDSINSLIHLRLLDLDA

TDISCLPDSIGSLTNLQILNLQRCYALHDLPMAITKLCSLRCLGLDDTPINQVPRGINKLSLLNDLQGFPVGHSY

VNTRKQDGWNLEELGHLSEMKRLGMIRLENAMPCGTSSLLDKKHLKFLNLRCTTHTKESYTMEDITNIENVFDEL

KPPCNLEDLSIAGSFGQRYPTWLGADLSSLKILRLIDCASWAHLPAVGQLPNLKCLKIMGASAVTKIGPEFLCDK

TATPRFLGTIAFPKLEWLVISDMPNWEEWSFTEEVVGASDGKSCTENNKMVLQVMPLLQKLELGDCPKLRALPQQ

LAQATSLKWLHIERAQALKVVEDLTFLSDSLLLSKCEGLERLSNLPQVRTLYVSECPALRWAQKLDCVQQLWLSK

DLQMEFPLWLSLLKQRYQQLHGEELDLYTW

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	233	535	2.8e-66
NB-ARC [Pfam fs]	276	535	1.5e-67
LRR [Pfam ls]	644	666	1.1
LRR [Pfam ls]	667	689	0.66

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	644	666	0.097
LRR [sensitive, ls]	644	666	1.1
LRR [sensitive, ls]	667	689	0.06
LRR [sensitive, ls]	667	689	0.66
LRR [sensitive, ls]	690	713	0.87
LRR [sensitive, ls]	690	713	9.5
LRR [sensitive, ls]	714	736	1.4
LRR [sensitive, ls]	714	736	16
LRR [sensitive, ls]	957	980	1.2
LRR [sensitive, ls]	957	980	13

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	93	987	7e-58
Mla1 [Hordeum vulgare].	96	815	1e-53
I2 [L. esculentum]	111	1035	6e-84
Pib [Oryza sativa].	178	883	5e-40
Xa1 [Oryza sativa]	241	963	2e-55
Pi-ta [Oryza sativa]	245	739	1e-41
RPS2 [A. thaliana]	266	933	5e-48
L6 [L. usitatissimum]	271	1055	9e-14
M [L. usitatissimum]	276	513	8e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6321.m00114

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)