Report for 6341.m00138

 > 6341.m00138, length: 770, copies: 1 

MAWHFTAAFMIATCLMLFPRSEQSSQGEVLQQLRKQLEYPRQLDVWNNPNSDPCYTQPTSVVTVACEGNAITELK

IIGDRITKPPKFSGYPVSNITLSEAFVLDSFVTTLARLPALHVVILVSLGLWGPLPDKIHRLSSLQVLDLSSNFL

YGSIPPKLSAMPKLHTLTLDGNFFNGTMPDWFNLYSNLTVLRLQRNRLKGPIPASIGKATMLSELALAGNSIAGE

VPQLGSLNKLEMLDLRDNELDGELPELPTALVTILLSKNSLKGEIPEQFGQLNRLQHLDLSFNFLVGKPPEKLFA

LPSISYLNLAANMLSGSFSTSLTCSSTLGFVDLSTNQLTGDLPVCLNVNVNNRVVKFDGNCFSDDPEHQHETKYC

QQPHKGRGSNKDVGLVVTVVGVVFIVLVLSLILMASNRRSCQRVLAEQQLLQKQMQDNSTSGMSTELLVNARYIS

QAVKLGTQIMPMYRAFSLEELKEATKSFERSAFLGEGSIGKLYKGKLENGTLIAIRCLALHQRYSIRNLKLRLDL

LAKLRHPNLVCLLGHCIDGEVDESSVKRVFLVYEYVPSGTFPSYLSGSSPEKTLNWCERLQVLMNIAKAVHFLHT

GIIPGSLYNRLKPSSILLDEHLVAKLSDYGLSIITEEIYKHEAAGEGQRCVEDNGGELENLEDDVLSFGGILLEV

LMGPKRHRKDLSVLSELVLSISKQEEREQVLDPVVLSTSSQDSLSMVISITVKCLSVESSARPSIEEVLWNLQYA

AQVQAISDGDQRSEVSSQTC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	139	162	0.01
LRR [Pfam ls]	187	210	0.18
LRR [Pfam ls]	255	278	2.9
LRR [Pfam ls]	279	302	0.12
Ser/Thr pkinase [Pfam fs]	478	599	2.5e-08
Ser/Thr pkinase [Pfam ls]	478	749	3.5e-11

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	139	162	0.00095
LRR [sensitive, ls]	139	162	0.01
LRR [sensitive, ls]	163	186	1.5
LRR [sensitive, ls]	163	186	17
LRR [sensitive, ls]	187	210	0.016
LRR [sensitive, ls]	187	210	0.18
LRR [sensitive, ls]	211	233	2.7
LRR [sensitive, ls]	211	233	29
LRR [sensitive, ls]	234	254	0.59
LRR [sensitive, ls]	234	254	6.4
LRR [sensitive, ls]	255	278	0.26
LRR [sensitive, ls]	255	278	2.9
LRR [sensitive, ls]	279	302	0.011
LRR [sensitive, ls]	279	302	0.12
LRR [sensitive, ls]	303	323	3.5
LRR [sensitive, ls]	303	323	38
LRR [sensitive, ls]	327	347	2.5
LRR [sensitive, ls]	327	347	28

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	4	296	3e-14
FLS2 [A.thaliana]	58	343	9e-24
FLS2 [A.thaliana]	74	363	4e-23
Cf-9 [L. pimpinellifolium]	83	360	3e-15
Cf-9 [L. pimpinellifolium]	92	343	8e-16
FLS2 [A.thaliana]	92	355	1e-25
FLS2 [A.thaliana]	92	365	8e-25
Xa21 [O. sativa]	92	346	4e-19
CLV2 [A. thaliana]	95	340	3e-18
CLV2 [A. thaliana]	95	363	1e-17
Xa21 [O. sativa]	96	570	2e-36
Cf-9 [L. pimpinellifolium]	102	406	6e-22
Cf-9 [L. pimpinellifolium]	102	346	1e-15
Cf-9 [L. pimpinellifolium]	105	363	1e-24
FLS2 [A.thaliana]	110	747	2e-49
FLS2 [A.thaliana]	110	343	1e-21
CLV2 [A. thaliana]	111	363	7e-26
FLS2 [A.thaliana]	116	343	2e-23
CLV2 [A. thaliana]	121	437	3e-21
Xa21 [O. sativa]	121	316	2e-22
FLS2 [A.thaliana]	126	353	1e-26
CLV2 [A. thaliana]	128	365	4e-22
Cf-9 [L. pimpinellifolium]	133	343	1e-10
Cf-9 [L. pimpinellifolium]	140	343	1e-16
FLS2 [A.thaliana]	149	360	1e-10
Xa21 [O. sativa]	191	379	3e-18
Rpg1 [Hordeum vulgare]	461	760	4e-18
Rpg1 [Hordeum vulgare]	464	744	1e-21
Pto [L. esculentum]	466	754	1e-39

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	388	410	in -> out

Report for 6341.m00138

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)