Report for 6354.m00099

 > 6354.m00099, length: 804, copies: 1 

MMRAGGCCCGGGGVWARLLLLVAVVAAPGAVVAQQGNLTSRADLSGLYALRGSLGLRARDWPRRADPCTAWAGVR

CSGGRVVSVDLAGLRRTRLGRLAPRFAVDGLRNLTRLEAFSAPGFGLPGSLPAWLGAGLAPTFQLLDISGCAVTG

EIPASAIAGLSNLTTLNLAGNLLSGQLPGSALAGLARLKTLNLSGNAFSGELPKAVWSLPELSVLDVSRTNLTGA

LPDTGLALPSNVQVVDLSGNLFYGGVPGSFGQLFGRTKLANISGNYFDGKLGVSNGDGGNFSFELNCFVDVTGQR

SQAECQQFYAARGLPYNVSGPAPTPQPAMPASPGRKKGHKNLKYILIGAICGGVLLVAVIAAILYCLVCSGSRRN

GSRNDQRESGVRNTQLGASGTGGGAVTAGTQPSASPANLAKVGDSFGYDQLVEATTDFGDDRLIKHGHSGDLYLG

ALHDGTSVVVKRITSSMAKKDAYMAELDLFAKGLHERLVPIMGHCLDKEEEKFLVYIFVRNGDLSSALHRKSGEE

EEGLQSLDWIKRLKIATGVAEALCYLHHECNPPMVHRDVQASSILLDDKFDVRLGSLSEVCPQEGEGHQNVITKL

LRFSSTADQGSSGSPSASCSYDVYCFGKVLLELVTGRLGISASNDAATNEWLDHTLRYINIYEKELMSKIIDPSL

IIDEDHLEEVWAMAIVAKSCLNPRSSKRPPMKYILKALENPLKVVREDNGGSSSARLRATSSRGSWNAAFFGSWR

HSSSDIGPSRDDNLLKRSETIKSSGGSNGDHSSSRRRQSKEIFPEPSGSRDTED

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	137	161	0.09
LRR [Pfam ls]	162	186	0.0056
LRR [Pfam ls]	187	210	0.057
LRR [Pfam ls]	236	259	6.3
Ser/Thr pkinase [Pfam ls]	433	715	5.6e-10
Ser/Thr pkinase [Pfam fs]	442	580	1.6e-07

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	137	161	0.0029
LRR [sensitive, ls]	137	161	0.09
LRR [sensitive, ls]	162	186	0.00018
LRR [sensitive, ls]	162	186	0.0056
LRR [sensitive, ls]	187	210	0.0018
LRR [sensitive, ls]	187	210	0.057
LRR [sensitive, ls]	211	234	0.5
LRR [sensitive, ls]	211	234	16
LRR [sensitive, ls]	236	259	0.2
LRR [sensitive, ls]	236	259	6.3

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	68	274	4e-15
FLS2 [A.thaliana]	71	282	1e-11
Xa21 [O. sativa]	79	527	5e-17
CLV2 [A. thaliana]	106	272	8e-12
FLS2 [A.thaliana]	122	713	1e-28
Pto [L. esculentum]	421	719	5e-24
Rpg1 [Hordeum vulgare]	421	715	1e-15

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	15	32	out -> in
putative TM domain	344	366	in -> out

Report for 6354.m00099

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)