Report for 6365.m00209

 > 6365.m00209, length: 944, copies: 1 

MEMQLAAVLASLALGGALLVLVFGKWWQPLADADRRVKELADAVEALLQLRSELLKVEPAPPESDQLARAWLRRV

QEAQDEVASLKARHDGGQLYVLRLVQYFVSTAPVAGSAEKQLKAVRALREQGEALLEAALSTPQAPPPLLRQPEE

LELPPGTSLTRPYLNEALRFLGDCDAALGVWGAGGVGKTTVLTHVRDACGLVAPFDHVLLVATSRDCTVAKLQRE

VVGVLGLRDAPTEQAQAAGILSFLRDKSFLLLLDGVWERLDLERVGIPQPLGMVAGRVRKVVVASRSEAVCADMG

CRKKIKMECLSEEDAWNLFEANAREETIHRHPRIPALSRQIGSKQALRLAFSVFLQKIDIFHPLDHTMVASECKG

LPLSLVTVGRAMSSKRTPKEWGDALDALKKTKLSSAPGPDKIAHPLVKFCYDNLENDMARECFLACALWPEDHNI

SKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDTHVRLHDVVRDAALRFAPGK

WLVRAGAGLREPPREEALWRDARRVSLMHNGIEDVPAKTGGALADAQPETLMLQCNRALPKRMIQAIQHFTRLTY

LDMEETGIVDAFPMEICCLVNLEYLNLSKNRILSLPMELSNLSQLKYLYLRDNYYIQITIPAGLISRLGKLQVLE

LFTASIVSIADDYIAPVIDDLESSGAQLTALGLWLDSTRDVARLARLAPGVRARSLHLRKLQDGTRSLPLLSAQH

AAEFGGVQESIREMTIYSSDVEEIVADARAPRLEVIKFGFLTKLRTVAWSHGAASNLREVAIGACHAVAHLTWVQ

HLPHLESLNLSGCNGMTTLLGGAADGGSAAGELVTFPRLRLLALLGLPKLEAIRGDGGECAFPELRRVQTRGCPR

LRRIPMRPAASGQCKVRVECDKHWWGALQWASDDVKSYFAPVLI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	146	470	1.9e-26
NB-ARC [Pfam fs]	178	341	4.1e-17
NB-ARC [Pfam fs]	369	470	3.8e-22
LRR [Pfam ls]	621	643	0.037
LRR [Pfam ls]	644	669	0.45

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	597	620	2.6
LRR [sensitive, ls]	597	620	81
LRR [sensitive, ls]	621	643	0.0012
LRR [sensitive, ls]	621	643	0.037
LRR [sensitive, ls]	644	669	0.014
LRR [sensitive, ls]	644	669	0.45
LRR [sensitive, ls]	670	693	2.7
LRR [sensitive, ls]	670	693	86
LRR [sensitive, ls]	829	853	0.49
LRR [sensitive, ls]	829	853	15

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	12	674	1e-21
RPS2 [A. thaliana]	32	929	1e-79
Mla1 [Hordeum vulgare].	38	687	3e-15
RPM1 [A. thaliana]	178	905	6e-18
Pib [Oryza sativa].	178	649	8e-12
Xa1 [Oryza sativa]	178	536	1e-18

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	5	27	in -> out

Report for 6365.m00209

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)