Report for 6372.m00146

 > 6372.m00146, length: 714, copies: 1 

MAALAAALVGFLLAVSSAPAGATTDASDAAALGNLYSSWNSPSQLAGWSAGGGGDPCGAGWQGISCSGAGVTEID

LSNNNLHGSIPYQLPPNLTYLNLATNNLSGNLPYSISNMVSLEYLNVSHNSLSQQIGDLFGSLNSLSELYTLCTF

MVIRFTFYSLRFTIDVSFNKLTGDLPNSLGSLSNLSSLYMQNNQLTGSVNVLSGLSLTTLNIANNNFNGWIPQEF

SSIPDLTLGGNSFTNGPAPPPPPFMPPPPRRPRNRPSHPRGSGDAPEGSVSPAGQGDKKQGLQTGPLVGIVAGST

VGALCALLLLVFCIRNAQKRKDDTSSNSKDFVGPLSVNIERASNREIPEQSPENTSVATMKISPAEKMTPERIYG

KTGSMRKTKVPITATPYTVASLQVATNSFCQDSLLGEGSLGRVYKADFPNGKVLAVKKIDSSALSLQEEDNFLEA

VSSMSRLRHPNIVPLTGYCVEHGQRLLVYEYIGNGTLHDVLHYSDELSRKLTWNIRVRVALGTARALEYLHEVCL

PSVVHRNFKSSNILLDEEHNPHLSDCGLAALTPNTERQVSTEVFGSFGYSAPEFAMSGIYTVKSDVYSFGVVMLE

LLTGRKPLDSSRERSEQSLVRWATPQLHDIDALAKMVDPALNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVV

QQLVRLMQRASIVRRQSGEELGYSYRAPEREGDMRDLSF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	70	90	1.9
LRR [Pfam ls]	92	115	1.1
LRR [Pfam ls]	116	139	0.074
LRR [Pfam ls]	206	237	7.2
Ser/Thr pkinase [Pfam fs]	404	680	9.2e-47
Ser/Thr pkinase [Pfam ls]	404	680	2.6e-47

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	70	90	0.093
LRR [sensitive, ls]	70	90	1.9
LRR [sensitive, ls]	92	115	0.053
LRR [sensitive, ls]	92	115	1.1
LRR [sensitive, ls]	116	139	0.0036
LRR [sensitive, ls]	116	139	0.074
LRR [sensitive, ls]	184	203	0.71
LRR [sensitive, ls]	184	203	15
LRR [sensitive, ls]	206	237	0.35
LRR [sensitive, ls]	206	237	7.2

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	12	233	7e-17
CLV2 [A. thaliana]	54	233	3e-13
FLS2 [A.thaliana]	69	240	3e-12
Xa21 [O. sativa]	69	232	4e-14
CLV2 [A. thaliana]	70	239	2e-11
FLS2 [A.thaliana]	70	244	7e-16
FLS2 [A.thaliana]	71	239	2e-13
FLS2 [A.thaliana]	71	244	3e-11
CLV2 [A. thaliana]	74	240	8e-12
FLS2 [A.thaliana]	74	695	4e-49
Xa21 [O. sativa]	74	244	2e-13
Rpg1 [Hordeum vulgare]	354	681	6e-22
Pto [L. esculentum]	392	678	4e-45
Rpg1 [Hordeum vulgare]	397	691	2e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	292	314	out -> in

Report for 6372.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)