Report for 6376.m00146

 > 6376.m00146, length: 958, copies: 1 

MPCLSDPSGMEFATGVMSTLLSKLAELLKEQYDLQKSVKEGVTFLMAELKSIQAALEKVSKVPLDQLDEQTKIWA

WDIRELSYDMEDNIDTFMLRVDGLEPAKKHNFTCLVDKCQKSLSKIKICNKIANEIKDIKSQVKEVMERRDRYKI

DDVATNLSTFVDPRILTLYGNVTKLVGIDKARDDLMKRLSVGDEALKKLKMVSVVRIGGLGKTTLSKVVFDMLKL

QFDCAAFVPVGQSPEIKKVLXDILVELNKAKYMSFDVTAVSERHMINELREYVDNKRYLIVIDDVWDTSKWNIIK

CALIDSNCGSRVITTTRICQVASEVAEEFGGVYIMEPLSDDNSKKLFYSRIFGSTYNGSTGNQSVEATEKILKKC

GGIPLSIITISSLLVDKPVGDWSAIYDSIGFRTRDQNEAVQNTRKILSFSYYHLPTYLKTCMLYLSIYPEDHLIG

MDTLIWKWVAEGFIQEEQDKELFEVGKRYFIDLINKSMIQPIEEEGSVFGCRIHDMVLDLIQNITAEGNFVKIFK

KLHEVCRLSSQRTNVRRIALHDNWNQLKNNDLDVALTQLRSFNAIECTISMMPSLLSFQVLRVLELQGCNVTGGL

YLKHIGKLRQLRYLGMKDTRVAELPMEIGDLVHLQTLDVRYTGLKELPSTICKLSKLMRLCVAGGMSVPMGVGNL

SSLQYLKLGWDSIKSNKYFAMEVGKLMELRILNICVDNEIDESMKKALLESLCGLRKLQNLVIDFDLIFWNTMSV

WEGWDHWEPPRQLRDFHISSMYLPRLPAWVNPMCIPYLSDLQLYVIAMEARDLDMLARMPALRTLILRTRQRISW

TVGGTGLFPNLRFCEMNIALTFLQGAMPMLTELQFELWAAEDGAAAGDVGLGQLPLLNYIGLLLMCTGATGRQVE

EAEVAWRRMVNAHPNRPATVVHRIGSWRISFLSSYRSRTFFFQHLMKEGDDDEEISAS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	160	469	6.4e-44
NB-ARC [Pfam fs]	175	469	1.7e-44
LRR [Pfam ls]	633	655	0.62

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	585	609	0.85
LRR [sensitive, ls]	585	609	9.3
LRR [sensitive, ls]	610	632	6.2
LRR [sensitive, ls]	610	632	67
LRR [sensitive, ls]	633	655	0.056
LRR [sensitive, ls]	633	655	0.62

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
I2 [L. esculentum]	9	818	4e-36
Mla1 [Hordeum vulgare].	10	917	1e-162
Pi-ta [Oryza sativa]	16	707	7e-69
Pib [Oryza sativa].	72	350	7e-11
RPM1 [A. thaliana]	79	660	4e-47
Xa1 [Oryza sativa]	119	755	2e-30
RPS2 [A. thaliana]	122	657	4e-24
L6 [L. usitatissimum]	151	397	6e-11
M [L. usitatissimum]	151	526	3e-14
Pib [Oryza sativa].	173	657	1e-52

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	129	149

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6376.m00146

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)