Report for 6380.m00144

 > 6380.m00144, length: 877, copies: 1 

MAMMDGNHIMPISGQGGTWALGAVQWCRWQEGNKFERCWRNTFGAAEFHLYAGPVWNLGYNYLTGAVPSFFGKFT

FMKYLAFPFNALSGPLPKELGNLTNLLSLGISFNNFSGQLPKELGNMTNLQQMITLQSFNNRRSSDNDFTGKIPD

YLGIMPKLEDIRIGDIVNGSSSLAFISNLTSLSNLILRNCKISGNLAPVDFSKFGVLTLLDLSFNNITGQIPQTI

LNMTNLEFLFLGNNSFTGSLPDAISPSLKAIDFSYNQLTGGLPSWATQNNFQLNLVANNFELGTIGHSTLPSGLN

CLQQDTPCFRGSAEYYSFAVDCGNNRTTRGLDGTIYEPDAANLGAASYYVTSDTRWGVSNVGNYFLATDGVNIIN

SPQKIQNVLDSRLFETARMSASSVRYYGLGLENGNYTVLLQFAEFAYPDSQTWLSLGRRVFDIYVQGDLKEKNFD

IRKMAGGKSFTAVNRSYTARVSKNFLEIHLFWADFTPTVRNGVPKRRSKAGAIAGITIGALVLGVVSLFGIFLLV

KKRRTIAEQQEELYNLAGQPDVFSNTELKLATDNFSYQNIIGEGGYGPVYKGKLPDGRVIAVKQLSETSHQGKSQ

FVTEVATISAVQHRNLVKLHGCCIDSKTPLLVYEYLENGSLDRAIFGIARGLTYLHEESSVRIVHRDIKASNVLL

DTDLTPKISDFGLAKLYDEKKTHVSTRIAGTMGYLAPEYAMRGHLSEKADVFAFGVLMLETVAGRSNTNNSLEES

KIYLLEWAWGLYEMGQALRVVDPCLKEFDEKEAFRVICIALLCTQGSPHQRPPMSRVVAMLIGDVDVAEVVTKPS

YITEWQLRDGGSSSYTTSSYAGSSNPEFSRQRETNPLARSSPTITKASLVGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	100	123	0.9
LRR [Pfam ls]	181	205	2.2
LRR [Pfam ls]	206	229	0.15
LRR [Pfam ls]	230	250	5.3
LRR [Pfam ls]	252	276	4.7
Ser/Thr pkinase [Pfam fs]	560	645	2.2e-17
Ser/Thr pkinase [Pfam ls]	560	813	3.8e-36
Ser/Thr pkinase [Pfam fs]	648	739	5.8e-25

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	100	123	0.033
LRR [sensitive, ls]	100	123	0.9
LRR [sensitive, ls]	181	205	0.082
LRR [sensitive, ls]	181	205	2.2
LRR [sensitive, ls]	206	229	0.0055
LRR [sensitive, ls]	206	229	0.15
LRR [sensitive, ls]	230	250	0.2
LRR [sensitive, ls]	230	250	5.3
LRR [sensitive, ls]	252	276	0.17
LRR [sensitive, ls]	252	276	4.7

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	45	268	3e-21
Cf-9 [L. pimpinellifolium]	54	268	4e-11
CLV2 [A. thaliana]	55	270	5e-19
CLV2 [A. thaliana]	55	299	5e-16
FLS2 [A.thaliana]	55	287	3e-19
FLS2 [A.thaliana]	55	268	1e-18
FLS2 [A.thaliana]	55	269	7e-16
Cf-9 [L. pimpinellifolium]	57	246	3e-13
Cf-9 [L. pimpinellifolium]	57	285	3e-12
Xa21 [O. sativa]	57	268	4e-20
CLV2 [A. thaliana]	58	311	1e-13
Xa21 [O. sativa]	58	249	6e-18
FLS2 [A.thaliana]	60	290	3e-23
FLS2 [A.thaliana]	61	284	8e-23
FLS2 [A.thaliana]	61	265	7e-19
Xa21 [O. sativa]	61	268	7e-17
Xa21 [O. sativa]	61	252	2e-15
Xa21 [O. sativa]	63	291	5e-20
Cf-9 [L. pimpinellifolium]	67	279	3e-15
CLV2 [A. thaliana]	87	304	2e-12
Cf-9 [L. pimpinellifolium]	91	335	1e-15
FLS2 [A.thaliana]	498	812	2e-40
Pto [L. esculentum]	548	808	6e-46
Rpg1 [Hordeum vulgare]	553	808	1e-32
Rpg1 [Hordeum vulgare]	553	819	9e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	503	525	out -> in

Report for 6380.m00144

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)