Report for 6414.m00176

 > 6414.m00176, length: 635, copies: 1 

MDERRAAASLLAVLVLSLVVSASSAAAGVAPAAPPDVLSSPAAAAGEGEAEALLAVKAALHDTANVLADWNAGSG

GVVVAGGGGGGGPCNWSMVTCSKTGHVSVLDLAHRNLSGTLSPAIGKLRRLRLLFLQHNAISGPIPDTIGRLKVL

QTLDLAYNHFTGTIPSILGHSKGIFLMDLSFNNLSGPAPVFSANSVLFSALTSVQKVILRGSETFVSRYSGHIFP

YQRPEIYLGHLKQFMIKEIKEATNNFDRRNILGQGGFGIVYKGRLRDGTIVAVKRMKDCFSVCGDDQFHTEVEVI

SLIVHRNLLRLTGFCITDTERLLVYPFMPNGTVSSKLQEYVGGKPTLDWTRRRKIALGAARGLVYLHEQCDPKII

HRDIKASNVLLDEYFEAVVADFGLVKLLDHGESHAVTAVRGTMGRIPPEYLMTGQTSEKTDVYGFGFLLIELITG

RKTMELHEDEYQEGGILDWAKELLEGNKLRSFVDSRLRDNYVIAELEEMVKIALLCTMYNPDQRPSMAEIAGMLQ

ESDGSVVEKWETLKDAERSKPSTPEFMLSSPVNFASDECNSIQLEAVELSGPREFFFSPEFLVDMFGLLLSEVKS

GLLASSAAVAKCELSRESSGFGRHTLSCSNALVTC

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	125	148	0.024
LRR [Pfam ls]	149	172	0.34
Ser/Thr pkinase [Pfam fs]	251	463	7.9e-44
Ser/Thr pkinase [Pfam ls]	251	524	1.6e-43

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	101	124	0.33
LRR [sensitive, ls]	101	124	8.9
LRR [sensitive, ls]	125	148	0.00089
LRR [sensitive, ls]	125	148	0.024
LRR [sensitive, ls]	149	172	0.013
LRR [sensitive, ls]	149	172	0.34
LRR [sensitive, ls]	173	195	0.6
LRR [sensitive, ls]	173	195	16

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	47	189	4e-19
Xa21 [O. sativa]	48	189	9e-15
CLV2 [A. thaliana]	52	194	2e-11
Xa21 [O. sativa]	97	196	3e-11
FLS2 [A.thaliana]	101	529	4e-45
FLS2 [A.thaliana]	101	201	4e-12
Xa21 [O. sativa]	101	212	2e-11
Xa21 [O. sativa]	102	209	8e-11
Xa21 [O. sativa]	104	337	2e-16
Rpg1 [Hordeum vulgare]	224	552	4e-23
Rpg1 [Hordeum vulgare]	237	573	9e-34
Pto [L. esculentum]	238	525	3e-49

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	7	29	in -> out

Report for 6414.m00176

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)