Report for 6417.m00178

 > 6417.m00178, length: 1345, copies: 2 

MALRPQLVPPLLSHRRRLVIPLLVLLLAAAASDEQLLSLRGQAAVLVSIKDAFSPPLPTPLRTTWSIANDASLCS

SWHAVRCAPDNRTVVSLDLSAHNLSGELSSAIAHLQGLRFLSLAANSLAGDLPPTIAALRHLRYLNLSNNQFNGT

LHYYLSTMNSLEVLDVYDNDLSGPLPLPDTNSNLRHLDLGGNFFSGSIPTSFGRLQAIQFLSVAGNSLSGRIPPE

LGNLTALRQLYLGYYNQFDGGIPASLGRLASLVHLDLASCGLQGEIPPSLGGLANLDTLYLQTNQLNGTIPPALA

NLTALRFLDVSNNALTGEIPPELAALTHLRLLNMFINRFRGGIPEFIADLRSLQVLKLWQNNFTGSIPGALGRVA

PLRELDLSTNRLTGEVPRWLCALRKLDILILLDNFLFGPVPEGLGACRTLTRVRLARNYLTGPLPRGFLYLPALT

TLELQGNYLTGQLHNEDEDAGSPLSLLNLSGNRLNGSLPASIGNFSSLQTLLLSGNHFTGEIPPEVGQLRRLLKL

DLSGNNLSGEVPGEVGECASLTYLDLSANQLWGAMPARVVQIRMLNYLNVSWNKLNGSIPAEMGSMKSLTDADLS

HNDFSGHVPHNGQFAYFNASSFAGNPRLVLCGTPAPGPAPGTTTPGSGGDGRAPVMWLAAALGLLACSVAFAAAA

VATTRSAIERRRRSGWQMRAFQKVRFGCEDVMRCVKENSVVGRGGAGVVYAGEMPGGEWVAVKRIVDGGFSAEVQ

TLGRIRHRHIVRLLAMCWSAEAKLLVYEYMAGGSLGDALHGHHRHHDEYDDDGSNTNIIGSLLLPWAARLRVATE

AAKGLCYLHHDCSPPILHRDVKSNNILLDARLEAHVADFGLAKYLRAGASECMSAIAGSYGYIAPEYAYTLKVDE

KSDVYSFGVVLLELITGQKPVGEHLQLHQEEEEEANTTTTVVDLVQWVRARCGSGKDGVWRVLDRRLGGDVPAAE

ATHMFFVAMLCVQEHSVERPTMRERCFLSGRCVHRASPPPWLPRPSSLTMSTSSATSATTDSATVLSSTSTVAPV

FVNPYATVAVKSHVPISLELHNPNYNKWKAFFRSMCGKFGLLDHLDAAPPANPDAAWEQADCCLCSWLFGSVADD

VLDLAMEHDQSAQDLWIAIDNLFQANKEPRAIYPHHEFHSMTQGDLSVADYCQRMKTAADALRDVGHPVTESQLV

LNLLRGVNSRFTSTADNIASAPILSSFASARNMLVLKELRNTNSVQVQSETALVAANNAHSNCTGGTCHSSGSGG

QQQNRAGGSKNKGKNGGRPGGQNNGSNSFGTSTFSIPAPRQAAPWVCFSPWAGQQQPWRAPSAEILGPYP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	112	135	6.6
LRR [Pfam ls]	136	159	0.62
LRR [Pfam ls]	160	181	5.1
LRR [Pfam ls]	183	206	0.0079
LRR [Pfam ls]	207	230	0.26
LRR [Pfam ls]	256	279	0.026
LRR [Pfam ls]	280	303	0.034
LRR [Pfam ls]	304	327	0.0039
LRR [Pfam ls]	352	375	6.3
LRR [Pfam ls]	376	399	2.4
LRR [Pfam ls]	473	496	4.7
LRR [Pfam ls]	497	520	0.012
LRR [Pfam ls]	521	544	1.3
Ser/Thr pkinase [Pfam fs]	710	920	2.4e-41
Ser/Thr pkinase [Pfam ls]	710	982	1e-34

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	88	111	1.4
LRR [sensitive, ls]	88	111	38
LRR [sensitive, ls]	112	135	0.24
LRR [sensitive, ls]	112	135	6.6
LRR [sensitive, ls]	136	159	0.023
LRR [sensitive, ls]	136	159	0.62
LRR [sensitive, ls]	160	181	0.19
LRR [sensitive, ls]	160	181	5.1
LRR [sensitive, ls]	183	206	0.00029
LRR [sensitive, ls]	183	206	0.0079
LRR [sensitive, ls]	207	230	0.0095
LRR [sensitive, ls]	207	230	0.26
LRR [sensitive, ls]	256	279	0.00096
LRR [sensitive, ls]	256	279	0.026
LRR [sensitive, ls]	280	303	0.0012
LRR [sensitive, ls]	280	303	0.034
LRR [sensitive, ls]	304	327	0.00014
LRR [sensitive, ls]	304	327	0.0039
LRR [sensitive, ls]	328	351	0.3
LRR [sensitive, ls]	328	351	8.1
LRR [sensitive, ls]	352	375	0.23
LRR [sensitive, ls]	352	375	6.3
LRR [sensitive, ls]	376	399	0.09
LRR [sensitive, ls]	376	399	2.4
LRR [sensitive, ls]	424	447	0.47
LRR [sensitive, ls]	424	447	13
LRR [sensitive, ls]	448	472	1.1
LRR [sensitive, ls]	448	472	31
LRR [sensitive, ls]	473	496	0.17
LRR [sensitive, ls]	473	496	4.7
LRR [sensitive, ls]	497	520	0.00043
LRR [sensitive, ls]	497	520	0.012
LRR [sensitive, ls]	521	544	0.047
LRR [sensitive, ls]	521	544	1.3
LRR [sensitive, ls]	545	566	0.78
LRR [sensitive, ls]	545	566	21
LRR [sensitive, ls]	569	592	0.55
LRR [sensitive, ls]	569	592	15
LRR [sensitive, ls]	593	626	2
LRR [sensitive, ls]	593	626	55
Retrotransposon gag protein [fs]	1162	1209	4.3e-06

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	24	790	1e-75
FLS2 [A.thaliana]	38	609	6e-76
Cf-9 [L. pimpinellifolium]	60	609	7e-53
CLV2 [A. thaliana]	72	611	9e-66
N [N. glutinosa]	77	403	5e-13
FLS2 [A.thaliana]	85	296	4e-24
Cf-9 [L. pimpinellifolium]	86	561	3e-38
Cf-9 [L. pimpinellifolium]	86	345	6e-27
FLS2 [A.thaliana]	88	999	1e-115
CLV2 [A. thaliana]	92	554	8e-51
CLV2 [A. thaliana]	92	345	5e-27
Cf-9 [L. pimpinellifolium]	107	663	3e-54
FLS2 [A.thaliana]	242	621	2e-56
Pto [L. esculentum]	695	997	4e-28
Rpg1 [Hordeum vulgare]	704	999	2e-27
Rpg1 [Hordeum vulgare]	712	999	6e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6417.m00178

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)