Report for 6420.m00122

 > 6420.m00122, length: 811, copies: 2 

MGYTTPPSPLTDEVIRRVRKLNVVGRIPAELQNLTFLQDLGLGFNPLSGQLPKELGNLTNLLSLGISLDNFTGEL

PEELGNLTKLEQLYIDSSGFSGPFPSTISKLKNLKKASDNEFTGKLPDYLGSLTELEDLVLRNCRISENLETVDF

SKFAALTMLFLGNNSLIGTLPDVISSSLKVMNLVANNIVLGSTKNSDISTRGSDNTIYEADATNLGDASYYVTDQ

IRWGVSNVGYFYQATDRMDIIYSSEHFQTAVDSKLFETARMSPSSLRYYGLGLENGNYTVMLQFAEFAFPDTQTW

LSLGRRIFDIYVQGALKEKNFDIRKTAGGKSFTAINRTYTATVLKNFLEIHLFWAGKGTSGIPTQGYYGPMISAL

SVTPSKQTCYINFNVGYIGSNFTPTVRNGVPKKGSKAGEIAGILTGASVLGLAGLFGIFMWIKKRRTMAKQKEEL

YNLVGRPDVFSNSELKLATDNFNSQNIIGEGGYGPVYKVVYFPQLSDLGKLPDGRVIAVKQLSESSHQGKSQFVT

EVATISAVQHRNLVKLHGCCIDSNTPLLVYEYLENGSLDQAIFGHSSLNLDWAMRFEIILGIARGLSYLHEESSV

CIVHRDIKASNILLDTDLIPKISDFGLAKLYDEKQTHVSTGIAGTFGYLAPEYAMRGHLTQKADVFAFGVVMLET

VAGRSNTNNSLEESKINLLEWAWDQYEKEQALRILDPNLKGFNKDEAFRVIRVALHCTQGSPHQRPPMSKVVAML

TGEVEVPKVVTKPSYITEWQMMDGNRSYVTSSYSGSTTHEFGRQNEIEPLQQSPPIIKAGR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	36	59	2.1
Ser/Thr pkinase [Pfam fs]	472	678	4.6e-51
Ser/Thr pkinase [Pfam ls]	472	752	1.1e-45

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	36	59	0.079
LRR [sensitive, ls]	36	59	2.1
LRR [sensitive, ls]	60	83	1.6
LRR [sensitive, ls]	60	83	44
LRR [sensitive, ls]	84	107	0.36
LRR [sensitive, ls]	84	107	9.7
LRR [sensitive, ls]	130	154	0.55
LRR [sensitive, ls]	130	154	15
LRR [sensitive, ls]	155	179	0.3
LRR [sensitive, ls]	155	179	8.1

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	10	216	2e-16
Xa21 [O. sativa]	10	192	7e-12
CLV2 [A. thaliana]	15	252	2e-11
Xa21 [O. sativa]	17	178	1e-17
Cf-9 [L. pimpinellifolium]	18	188	3e-14
Xa21 [O. sativa]	18	204	9e-14
FLS2 [A.thaliana]	22	232	2e-18
FLS2 [A.thaliana]	22	163	1e-10
CLV2 [A. thaliana]	23	172	9e-13
FLS2 [A.thaliana]	23	188	2e-17
CLV2 [A. thaliana]	25	204	2e-12
FLS2 [A.thaliana]	25	190	2e-13
FLS2 [A.thaliana]	25	183	3e-13
Xa21 [O. sativa]	25	198	4e-14
Xa21 [O. sativa]	40	188	4e-15
FLS2 [A.thaliana]	460	750	1e-41
Pto [L. esculentum]	460	747	6e-56
Rpg1 [Hordeum vulgare]	460	751	2e-36
Rpg1 [Hordeum vulgare]	460	747	2e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	415	437	out -> in

Report for 6420.m00122

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)