Report for 6422.m00148

 > 6422.m00148, length: 1222, copies: 1 

MAELLSALLPALLKKAGESLGTEFSFIGGIERRRSELYTLLLAVNQVINDAEDQASKKPAVKSWIAKLKLAACDA

DDALDELHYEELRCEALRRGHKINTGVRAFFSSHYNPLLFKYRIGKRLQQIVERIDQLVSQMNRFGFLNCSMPVD

ERMQTYSYVDEQEVIGRDKERDEIVHMLLSAETDELLILPIVGIGGLGKTTLAQLVFNDVKVKAHFQKHMWVCVS

ENFSVPVIVKGIIDTAIGNDCGLKFDNLELLQQRLREELGQKRYLLVLDDVWNEDKQKWGALRTLLGSCGMGSAV

VVTTRNVKVASIMESISPLCLENLNPEDSWIVFSRRAFGTGVVETPELVEVGKRIVEKCCGLPLAIKSMGALMST

KQETRDWLSILESNTWDEESQILPALSLGYKNLPSHMKQCFAFCAVFPKDYEIDKDDLIHLWVSNGFIPSKKMSD

IEENGNHVFWELVWRSFFQNVKQIGSIFQRKVYRYGQSDVTTFKIHDLMHDLAVHISGDECLALENLAKIKKIPK

NVHHMAFEGQQKIGFLMQHCRVIRSVFALDKNDMHIAQDIKFNESPLRVVGLHIFGIEKFPVEPAFMKHLRYLDL

SGSYINTLPEAASALYNLQVLILNRCRRLTHLPDGMKFMISLRHVYLDDCARLTSMPAGLGQLINLRTLTKFVPG

NESGYRINELNDLKLGGKLQIFNLIKVTNPIEAKEANLECKTNLQQLALCWGTSKSAELQAEDLHLYRHEEVLDA

LKPPNGLTVLKLRQYMGTTFPIWMENGITLRNIVKLKVTDSINCMKLPSVWKLPFLEVLRLKDMKKLKYLCNGFC

SDKECDHQLVAFPKLKLLSLERMESLENWQEYDVEQVTPANFPVLDAMEIIDCPKLTAMPNAPVLKSLSVIGNKI

LIGLSSSVSNLSYLYLGASQGSLERKKTLIYHYKENLEGPTDSKAHVLAHHFSSWGVLTKLHLQGFSALAPEDIQ

NISGHVMSVQNLDLISCDCFIQYDTLQSPLWFWKSFACLQHLTIEYCNSLTFWPGEEFQSLTSLKRLDIRYCNNF

TGMPPAQVSVKSFEDEGMHNLERIEIEFCYNLVAFPTSLSYLRICSCNVLEDLPEGLGCLGALRSLSIDYNPRLK

SLPPSIQRLSNLTRLYLGTNDSLTTLPEGMHNLTALNDLAIWNCPSLKALPEGLQQRLHSLEKLFIRQCPTLVRR

CKRGGDYWSKVKDIPDLRVTGD

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	148	448	1.5e-80
NB-ARC [Pfam ls]	148	448	4.2e-81
LRR [Pfam ls]	594	616	0.8
LRR [Pfam ls]	617	637	0.79
LRR [Pfam ls]	641	664	4.1
LRR [Pfam ls]	1112	1135	0.54
LRR [Pfam ls]	1136	1159	0.22

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	594	616	0.029
LRR [sensitive, ls]	594	616	0.8
LRR [sensitive, ls]	617	637	0.029
LRR [sensitive, ls]	617	637	0.79
LRR [sensitive, ls]	641	664	0.15
LRR [sensitive, ls]	641	664	4.1
LRR [sensitive, ls]	1013	1037	2.3
LRR [sensitive, ls]	1013	1037	62
LRR [sensitive, ls]	1038	1060	0.43
LRR [sensitive, ls]	1038	1060	12
LRR [sensitive, ls]	1088	1111	0.63
LRR [sensitive, ls]	1088	1111	17
LRR [sensitive, ls]	1112	1135	0.02
LRR [sensitive, ls]	1112	1135	0.54
LRR [sensitive, ls]	1136	1159	0.0082
LRR [sensitive, ls]	1136	1159	0.22

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	3	685	1e-40
I2 [L. esculentum]	36	1219	1e-117
RPM1 [A. thaliana]	62	724	2e-49
Xa1 [Oryza sativa]	116	1194	3e-77
RPS2 [A. thaliana]	117	885	8e-38
L6 [L. usitatissimum]	159	1197	1e-20
M [L. usitatissimum]	159	422	4e-12
Pib [Oryza sativa].	160	625	6e-37
N [N. glutinosa]	162	888	9e-13
Pi-ta [Oryza sativa]	163	707	6e-22
RPP5 [A. thaliana]	790	1197	4e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6422.m00148

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)