Report for 6422.m00154

 > 6422.m00154, length: 1442, copies: 1 

MAELASGAVSSLLGLLQKEAQLLGRMGSDVEFIREEMESMSRTAHLASGHDKQVRTWMKQVRDLAHDCSNCVDDY

LRSGDLAVHLARGGVRRYIWWTYWLVRKMHDQQNAALRLRELRDRVSDVGKRRLRYGVEIPSKGRAAQILPSSTP

SRGSAAAPGVIEDEDDDDNDTLHQVVAAMTGDLDLRRGIQEHRTLEDFCAEKLVNWVSTSREQEPGQQGPSSIPS

IAIVALDAGASSAAAQGALELATAHFDKSFSINLQALHHPWDLPVLPWEILYYILFQCKQHGTGQGEADDEKRRK

AFQDKLNTHDEIWKEIEKMNIDDKIEEVKRKIGEVSGTTEEVKNNKIEGTKYLKATTDISIGMLHQALRLMLNSE

GLSIIGRSSDTKIMQETAMMLKQHMESVVPKPPIQLDDIQYLDILQKVFLDTKPSHAKETSTNTATTLGEDHIKE

ILNNHKIALDIVRELLRWSQLPEGNSVKELAKGVLQGVRDQNSVIDAAISETEEKMNENPRDTKAKGTNAAIQET

NEKVGEISSAIKFSLFIKGIVDKIKVPLERKRTLFILIDDRGYISEWEGIKNALSLLDCSNGNAVIVITNNNQKA

QGFCSTPWEPITYSLVGLYYDIVLKMTSQRENEGGNNNSQIFRDILVKCDPNEFCMRMFAHAMYANPNRSYEELR

RLLGSLQVFGNSTDAYATKAKMIFKFSYRDLPREHKTCLLYLAIFPQGHEIKRSTLIERWAIEELITNEDWPTVV

RHGKRCFQALIDRWFVTPVELSAAGKVKSCKVDGLVHDFITKIAKKEHILDMRLSQLRAHHFSTFSGLRLCASDT

IDTVVEKLPRYLHKLHLLKLLDLEGCQYHLDKNHLKDICSILHLKYLSLRRTDVADLPHEINNLHELEVLDIRQT

KVSEHATKNIVLLKLRRLLAGQVDPSTSHEMGKPLRSAVLIPRKINKMENMEVLSNVKAYSRNGAELKEIRKLGQ

LRKLGVVIVNNENHLKNLLWAMSDLKECLQSLSITILKTRNEGDTDNEQKVLPHDLYNHLIQPPKVLESLSIDGP

TKIVRLLTMFAKGSNELAKVTLRHTSLKKKNLVHITMLPKLCCVRLRQNAYTEKELTFETEEFPHLKNFLVEQLH

ETDMINFKKGAAPELEKIVLFRTSIKHLCGVGALPNLKELELKENEQLVLSPEAGTVSADPVILEDWTDSTDIIV

HKDGATSAEKSALTFKKKEFKHLKYFLVEGHHMQTDIKFEGGAPELEKIVLSNTNIESLDGVDGLAKLMEIDLKG

NKTILSLFATANHIAKVTLSDTCLKQGDLQILAKKPKLCWLLLLDKSYDESHLTFNKDEFPKLKHLTITCSKISG

INFAKESACKLEKITWSFTELESLSGIDNLPELKELELEGKSVPLQVWRDINAHNKKLIHKRTQVQDEPKGGPTL

ANKKKSAFFSIFPSTHR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	698	746	2.5e-10
LRR [Pfam ls]	868	890	5.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	868	890	0.2
LRR [sensitive, ls]	868	890	5.5
LRR [sensitive, ls]	1161	1186	3.5
LRR [sensitive, ls]	1161	1186	95
LRR [sensitive, ls]	1245	1266	0.28
LRR [sensitive, ls]	1245	1266	7.7
LRR [sensitive, ls]	1337	1362	1.9
LRR [sensitive, ls]	1337	1362	50

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	538	1167	4e-19
Mla1 [Hordeum vulgare].	545	1143	6e-26
Pib [Oryza sativa].	545	1167	7e-27
Pi-ta [Oryza sativa]	545	983	2e-17

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6422.m00154

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)