Report for 6439.m00196

 > 6439.m00196, length: 276, copies: 2 

MSRPTQHHPTAAATAVILLLLAVSPAPSGADPDDERCLSSLQQSLSGLRNWSKASFSAPCEGFISHLQGVTCNNG

RVYKLSLPGLSLAGTIPPDLSNCTNLQSLDLSSNALSGAIPPELSGLLNLAVLNLSANRLSGAIPRDLARCAYLN

VIDLHANQLTGSIPDELGLLVRLSTFDVSYNRLSGPIPVLLANRSGTTGRFNATSFVGNKDLYGYPLPPMRGHAL

SVLAIVGIGLGSGLLSLVLSFSAVCLWLRATDRTATMPGEEGKISHLMPDY

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	100	123	0.0013
LRR [Pfam ls]	124	147	0.72
LRR [Pfam ls]	148	171	2.7

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	76	99	0.7
LRR [sensitive, ls]	76	99	18
LRR [sensitive, ls]	100	123	5.1e-05
LRR [sensitive, ls]	100	123	0.0013
LRR [sensitive, ls]	124	147	0.028
LRR [sensitive, ls]	124	147	0.72
LRR [sensitive, ls]	148	171	0.11
LRR [sensitive, ls]	148	171	2.7
LRR [sensitive, ls]	172	195	0.31
LRR [sensitive, ls]	172	195	7.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	17	198	3e-18
CLV2 [A. thaliana]	19	188	1e-14
Xa21 [O. sativa]	33	193	4e-12
FLS2 [A.thaliana]	43	200	8e-17
FLS2 [A.thaliana]	62	188	1e-10
Cf-9 [L. pimpinellifolium]	66	201	1e-13
FLS2 [A.thaliana]	69	231	2e-14
FLS2 [A.thaliana]	72	269	1e-14
FLS2 [A.thaliana]	72	193	8e-12
Xa21 [O. sativa]	72	193	2e-13
FLS2 [A.thaliana]	73	188	6e-12
CLV2 [A. thaliana]	75	245	1e-10
FLS2 [A.thaliana]	76	196	6e-12
FLS2 [A.thaliana]	76	188	2e-11
Xa21 [O. sativa]	76	188	1e-15
FLS2 [A.thaliana]	77	250	8e-17
FLS2 [A.thaliana]	77	195	1e-11
CLV2 [A. thaliana]	80	192	8e-14
CLV2 [A. thaliana]	80	188	5e-11
FLS2 [A.thaliana]	80	187	1e-14
FLS2 [A.thaliana]	80	188	9e-11
Xa21 [O. sativa]	80	189	5e-13
FLS2 [A.thaliana]	84	188	1e-16
CLV2 [A. thaliana]	86	188	3e-12
CLV2 [A. thaliana]	87	185	1e-12
FLS2 [A.thaliana]	87	198	4e-13
FLS2 [A.thaliana]	89	188	3e-15
Xa21 [O. sativa]	95	203	9e-12
Cf-9 [L. pimpinellifolium]	104	222	2e-12

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	230	252	out -> in

Report for 6439.m00196

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)