Report for 6441.m00136

 > 6441.m00136, length: 1559, copies: 1 

MSHSSGASDASSTSDEEPVPAPSTSVLQTVNIRSHVPVVLDLDVSNYSQWRYSFESVLGKFGLEAHVQEPPALDL

RTAEWRRADHCVVNWLHNSIAKNVFDVVYKPRASAFTVWSDIEGVFRDNAVQRSVYLETEFRSINQGDMTITQYT

AKLKQLADGLRDINMPVSEPSQVLNLLRGLNTKFRSLRASFADRNPPHTFMTARSYLLLAELQMQHDAKAEAGEA

LYAGTGSSSGTSDTTGQPRPKGRGKRRGRGGGAPPGGAPSTPGGGAGAGHDGQPRPPAPWGYNPWTGFVQAWPFP

FRAPGAGVLGPRPPFQAQQAMTAQHLLPALPPASPGVQSTGAWDNSALYSALQSAGVATTTPPSAADWFLDTGAS

AHMSSTPGILAHPRPLPFSSCITVGNGAKLPVTHTASTHIPTSSTDLHLHNVLVSPPLIKNLISVKKLTRDNNVS

IEFDPTGFSIKDLQTQVVKLRCDSPGDLYPLRLPSPHALSATSSPSVEHWHLRLGHPGSASLSKVLGSFDFQCNK

SAPHHCSACHVGKNVRLPFHSSSSQTLFPFQLVHTDVWTSPIYSNSGYKYYVVFLDDFTHYIWTFPVRNKSEVFH

TVRSFFAYAHTQFGLPVLALQTDNGKEYDSYALRSLLSLHGAVLRLSCPYSSQQNGKAERILRTINDCVRTMLVH

SAAPLSFWAEALQTATHLINRRPCRATGSLTPYQLLLGAPPTYDHLRVFGCLCYPNTIATAPHKLSPRSLACVFI

GYPADHRGYRCYDMVSRRVFTSRHVTFVEDVFPFRDVPSPRPSAPPPPDHGDDTIVLLPAPAQHVVTPVGTAPAH

DAASPPSPASSTPSSAAPAHDVAPPPSPETSSPASASPPRHAMTTRARAGISKPNPRYAMTATSTLSPTPSSVRA

ALRDPNWRAAMQAEFDALLANRTWTLVPRPPGARIITGKWVFKTKLHADGSLDKYKARWVVRGFNQRPGVDFGET

FSPVVKPATIRTVLTLISSKQWPAHQLDVSNAFLHGHLQERVLCQQPTGFEDAARPADVCLLSRSLYGLRQAPRA

WFKRFADHATSLGFVQSRADPSLFVLRRGSDTAYLLLYVDDMILSASSSSLLQRIIDRLQAEFKVKDMGPLKYFL

GIEVQRTADGFVLSQSKYATDVLERAGMANCKAVDTPADAKPKLSSDEGPLFQDSSWYRSIAGALQYLTLTRPDI

AYAVQQVCLHMHAPREAHVTLLKRILRYIKGTAAFGLHLRASTSPTLTAFSDADWAGCPDTRRSTSGFCIFLGDS

LISWSSKRQTTVSRSSAEAEYRGVANAVAECTWLRQLLGELHCRVPQATIAYCDNISSVYMSKNPVHHKRTKHIE

LDIHFVREKVALGELRVLPIPSAHQFADVFTKGLPSSMFNEFRASLCVGNNKFTGVIPMEIGELKALVSLDLSFN

NLNREIPQSISNLKNLMVLDLSYNHLTGAIPPALVNLHFLSEFNVSYNDLKGSVPIGGQFSTFPSSSFAGNPELC

SPMLLHRCNVAEADLSPPSSKKDYINKVIPVIAFCVFFGIGVLYDQIVVSRYFRLNRLR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	1416	1439	0.26
LRR [Pfam ls]	1440	1463	0.025

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
Retrotransposon gag protein [fs]	81	182	4.8e-17
Retrotransposon gag protein [ls]	81	182	1e-15
Integrase core domain [fs]	550	712	1.2e-46
Integrase core domain [ls]	550	712	1.3e-46
LRR [sensitive, ls]	1416	1439	0.013
LRR [sensitive, ls]	1416	1439	0.26
LRR [sensitive, ls]	1440	1463	0.0012
LRR [sensitive, ls]	1440	1463	0.025
LRR [sensitive, ls]	1464	1497	1
LRR [sensitive, ls]	1464	1497	22

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	1365	1532	3e-13
FLS2 [A.thaliana]	1378	1512	2e-15
FLS2 [A.thaliana]	1380	1480	7e-11
Xa21 [O. sativa]	1381	1480	6e-11
CLV2 [A. thaliana]	1385	1481	3e-12
Xa21 [O. sativa]	1392	1496	2e-11
CLV2 [A. thaliana]	1396	1479	7e-11
Cf-9 [L. pimpinellifolium]	1398	1549	4e-16
Xa21 [O. sativa]	1400	1490	4e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value
Retrotransposon gag protein	81	182	8.9e-16
Integrase core domain	550	712	1.1e-46

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	1528	1550	out -> in

Report for 6441.m00136

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)