Report for 6444.m00131

 > 6444.m00131, length: 1165, copies: 1 

MESALVSFALKLGGKIMGMATGKVEKLLGVPGEITKLETTLGDLRCYLVDADNRRSLEEAVKRWVRELKDVMYDA

DDILDLCQLVEDEGYDDARTNPSCWNASKFWFCNPVASHKIGRKIQALNRRLDDLSRRRSRLKFLPSVCSAAGAG

SSLDDRCRTGPSVEQTFIVGEKIEQDARSLVNLLVNRVDDDHDPARSSNGNVIVVAITGVGGIGKTTLATMVFND

SELENHFKEKIWLSVNQDVNEIDLLKHAIEQFGGNHEHCRADTVLLENALERAVRKKRFLLVMDDVWSDNVWNNF

LRVPLSSGASGSRVLLTTRNEGVARGMRAQHLHPVEKLDRFDGWSLLKNQCANLLANQKYGKFYVDITVKLQSTP

LRKRYSALWPKLHTVMSYIAAFWVTTDESEICALEDIGMKIVDRCDGLPLAIKVIGGLLRQRNNTRNSWLRIYNH

SAWSVNTTDYLNRAIILSYEELPPHLKQCFLYCSLFPKDEVIRRGDIVQMWMAEGFVQDEVSNSFLLEDLGFEYF

NELASRNLLEQKREFYDHSACTMHDIVRYFAQSVGKEEGILLTEGQNTSIPTIRTLRLRQLSVSKKDVNWGALKQ

QVSLRALMLNKISMVDSNDFLNSLSSLRVLNLQNIVNLVELPQSICHLKHLRYLAVAGTSISTIHSNIGDLKFLQ

VIDLVDCTNITQLPQSILKLQKLRFLNLRRTRITSIPHGFGRLKDLVFMAGFPTHSSDDRTDGWCSLEELGTLSK

LKILEITGLEKAPSGSSAAKANLSSKPNLTELYLMCASMLGTDNGDVQCNISAEEQDRIEKVLSNLCPPQSTELL

TIGGYFGVELPKWMQMMSAFTNLTRLELKDYACCNRLPNGMGQLPFLDHLWIERAPAIKHIGRELLFPSSYGSSV

AFPKLKTMGFKWMPRWEMWDWEEQVRAMPVLEGLSISYCELKYIPPGLPCQARALKSLYLESVRQLVSIENFPSL

VNLQLIENPKLERVTNNPSLKNIYIWECPALKVLEELPLLNSIYWWDLKAEKLPECFGVPMLKKLFVHCNRRLFG

LISLQDTTSEWGKIQHVSQLKAYGCTLRIDLSGYTLPTGLSGYNFLREVIDLFGYVSYTKEPYSFETRTYETSEQ

AQRYMASIALIFQISVHAIQLRLRMCPAVLNQSSGTETNS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	152	512	1.5e-55
NB-ARC [Pfam fs]	197	349	3.2e-34
NB-ARC [Pfam fs]	409	512	2e-34
LRR [Pfam ls]	626	649	5.5
LRR [Pfam ls]	650	672	6.4
LRR [Pfam ls]	673	696	7
LRR [Pfam ls]	697	719	0.012
LRR [Pfam ls]	930	949	4.3

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	626	649	0.2
LRR [sensitive, ls]	626	649	5.5
LRR [sensitive, ls]	650	672	0.24
LRR [sensitive, ls]	650	672	6.4
LRR [sensitive, ls]	673	696	0.26
LRR [sensitive, ls]	673	696	7
LRR [sensitive, ls]	697	719	0.00043
LRR [sensitive, ls]	697	719	0.012
LRR [sensitive, ls]	930	949	0.16
LRR [sensitive, ls]	930	949	4.3
LRR [sensitive, ls]	954	976	2.9
LRR [sensitive, ls]	954	976	78
LRR [sensitive, ls]	994	1016	3.2
LRR [sensitive, ls]	994	1016	88

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	1	1007	3e-54
Pi-ta [Oryza sativa]	14	754	1e-24
Mla1 [Hordeum vulgare].	29	756	2e-48
I2 [L. esculentum]	34	1008	4e-79
RPS2 [A. thaliana]	34	703	1e-35
Xa1 [Oryza sativa]	109	1018	3e-44
Pib [Oryza sativa].	164	705	1e-35
M [L. usitatissimum]	201	1040	1e-10

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	117	138

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6444.m00131

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)