Report for 6461.m00128

 > 6461.m00128, length: 1203, copies: 1 

MNSLLKQAAYPFNIRRNVQDLITHTDDLVARRHDIARQIEAADRDGGMIPTHEARQWLDRVESARLSADTIRGRY

EQRCRMFGGCSLNLWSNYRISKRAAERLAIVRSYEVVPSPITIDPPALAAVNIPIESVQIHSQESILEEALRCIT

EGPSAIIGICGPGGVGKTHLLKRINNNFVGDSTFRLVIFVTATRGCSVQTIQTQIMERINLNRDGDSVTRANRIV

RFLKAKSFLLLVDDLWGGELEMGSVGIPYPLKNEGQLKQKVVITTRSPTICELMNVTTHVKVEVLEDDEARELFM

EYNGHKGLYSDPHIGDLAKELVKELKGVASQLIHFGKEMRGRKDPKRWEDAIFVVKTSDTTHLQDEDQLSLKGTI

VRNLKVATENMLARSNEVRQKIEIAERNGKTPTNGVISWLRRVDSITSSAEIICGQHQLNLDVSQSAAEKLHEVQ

ECLDNQPSDIVVDVLQTPTEYIPIQSFELRSQNIVLQDALRYIADDSVEMIGIRGAAGVGKTHILKKINNSFHEH

SDFQFVIFVTASRNIREQIARRLGINQDDRDAKLVTRISKFLEKRSFLLLVDDLREILDPKEAGIPFPLRNSSEI

RQKVVFTTRSEHICGQMAVSKKIKVTCLEQDEAIYLFRQNVDMGILHSSPRIEELANTLAKELSGLPLALITTAR

AMSSRHHPTGWEDAIREMHDLFRHKDNPLNMEKGVYQPIKFSYDSLRNDTLKQCFLTCSMWPVDQNIRKDELVQC

WMGLGLVDEPNIRSSYNEAYKLICDLEAACLLESGPNNDVKMQNVIRDTALWISHGKWVVHTGRNSLDANIARVI

QRFIAVTYLDLSWNKLENIPEELCSLTNLEYLNLSYNFSISEVPKCLGFLIKLKFLYLQGTNIKTIPDGVISSLT

ELQVLDLLNMYFGEGITMSPVEYVPTILPELGAINNLKEVDIVIEGSFQYELLSQCCNLPLRLVALRKMEQSCAL

FRLSESIFQDNLLGTTLNYLEVSDSDMNVIEIFRGAEAPNYCFEALKKIELFNLKMLKHIKCFRLSPHDMFPSLS

VLRVSFCDRLKNISCTMYLSKLQHLEVSYCNSITQAFGHNMNKSTVPTFPCLRYLSFAYLDGLEKICDSDVTFPQ

LETLKFTGCPNLMSLPFKKGTVPLNLRELQLEDVKLWKNLIWEEEGVLDLLEPYLKIKELPTEEELTKALQSMLP

FYP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	117	426	3.5e-13
NB-ARC [Pfam fs]	154	352	4.6e-25
NB-ARC [Pfam ls]	469	762	3.5e-45
NB-ARC [Pfam fs]	494	762	3.9e-48
LRR [Pfam ls]	830	852	0.029
LRR [Pfam ls]	853	875	0.33
LRR [Pfam ls]	877	900	0.0017

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	830	852	0.0011
LRR [sensitive, ls]	830	852	0.029
LRR [sensitive, ls]	853	875	0.013
LRR [sensitive, ls]	853	875	0.33
LRR [sensitive, ls]	877	900	6.6e-05
LRR [sensitive, ls]	877	900	0.0017
LRR [sensitive, ls]	991	1012	2
LRR [sensitive, ls]	991	1012	50
LRR [sensitive, ls]	1048	1070	2.3
LRR [sensitive, ls]	1048	1070	58
LRR [sensitive, ls]	1071	1103	0.43
LRR [sensitive, ls]	1071	1103	11
LRR [sensitive, ls]	1125	1155	1.6
LRR [sensitive, ls]	1125	1155	41

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPS2 [A. thaliana]	3	348	2e-29
Mla1 [Hordeum vulgare].	312	943	2e-19
RPS2 [A. thaliana]	376	1165	2e-64
Xa1 [Oryza sativa]	496	844	1e-17
Pib [Oryza sativa].	498	905	2e-14
I2 [L. esculentum]	500	1192	2e-16
RPM1 [A. thaliana]	500	906	9e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6461.m00128

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)