Report for 6462.m00109

 > 6462.m00109, length: 1020, copies: 1 

MAEKLITHALRDALFQFAVKSRKLASPMLRALGRASTGPVTVGDDELAALRSMLRRVHAALRDADSLSVTDHSVR

LWLAELGDLEYRAEDVFEELEYECHRAAQLEDLKIDLLRAAALATGKRKREVAQLFAAAPAARLRRKIDDIWARY

EEIASDRKKLRLRPGDGAARPAVGALVPSSSLPRCQIHGRERDLQRVVEMVCQSQPDGRRNYAVVAIVGMAGVGK

TSLMQHVCGEEAVASRFDLALWVWVSQEFDVVGVTAKIVEAITRSRPDCSELSALHGTMVEHLTGKRCLLVLDDV

WDDNPNHWDTITAQLSFCAPGSTVVVTTRSRMVAKMVTPNVYHLGCLSDEHCWLVCQRRASHGCTTATIDDELTN

IGQQIAKKCRGVPLAAEAAGTAMSTSITRKHWTHVLNSNLWADNDEAKNHVLPALKSFVFDKDALVQLWTAQGFI

DAGGEQRPEDVGTGYFYDLVARCFFQPSPSHGIDQEKFVMHDLYQELAQFVSGNECRMIQHIVSGNECRTIQQSN

LNRADKTSARHLSIVNNESHPEQELSLDSFCGQDLRTFLFLSRLEQIIHGEMPLRRKIAPYGLMTDFECLRVLDL

SNTDIVEVPKSIGSLIHLRYLGLDNTRIQMLPESVGALFHLQTIKLNHCSSLTQLPHGSKLLQNLRCFEIAHSNV

QMPSGIRALTSLQKLPVFVVGDGSAGCGIGELDELINIRGDLHIIGLSNLDAAQAANVNLWKKEGLQKLTLEWCD

ILQNSDVTLRDLQPNEANRVPDCRCVPQQNDRAAQVLQCLRPNSNLEELIIKGYNGSSFPSWVGSLPLDRLASIE

LKDCQNCEELPPLGCLPSLKHVVIQSLPSVQLVGPEFLGDVGDIPYNNRKKAYFAFPALESLKFRDMGAWEEWSG

VKDEHFPELKYLSIVRCGKLKVLPNFTSGPKQRIRNCEKLLQPLCQNIHWNLMEYIPPSSELSYTCMAEENLISR

IDMNFSGSIEPELASFPGLTIWEVQSREIIKGAKGNTQLCKVTAT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	172	455	2e-30
NB-ARC [Pfam fs]	211	413	6.5e-38
LRR [Pfam ls]	594	616	0.41
LRR [Pfam ls]	617	639	5.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	594	616	0.02
LRR [sensitive, ls]	594	616	0.41
LRR [sensitive, ls]	617	639	0.26
LRR [sensitive, ls]	617	639	5.4
LRR [sensitive, ls]	640	662	0.39
LRR [sensitive, ls]	640	662	8.1
LRR [sensitive, ls]	664	685	3.6
LRR [sensitive, ls]	664	685	75
LRR [sensitive, ls]	740	763	3.6
LRR [sensitive, ls]	740	763	74
LRR [sensitive, ls]	820	842	0.6
LRR [sensitive, ls]	820	842	12
LRR [sensitive, ls]	908	930	1.9
LRR [sensitive, ls]	908	930	40

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
RPM1 [A. thaliana]	46	666	2e-36
I2 [L. esculentum]	47	937	4e-91
Pi-ta [Oryza sativa]	64	690	1e-17
Mla1 [Hordeum vulgare].	71	710	2e-28
Xa1 [Oryza sativa]	137	964	3e-61
Pib [Oryza sativa].	151	646	2e-20
RPS2 [A. thaliana]	177	964	4e-22

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6462.m00109

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)