Report for 6483.m00184

 > 6483.m00184, length: 870, copies: 2 

MASDYQQTSVGKNKQSLIDCMLVKAFGKPYVSNTHMSAILCNKICYMLAFADISVAGYLVTWNFRNNYLTGPIPP

FIGKFTSMQYLSLSLNPLSGLLPKELGNLTNLVSLGIGSNNFTGGLPEELGNLTKLQRLKASDNGFNGKIPEYLG

TITNLVEIPHSIEMRIYASQRIGDIVNGISPLAFISNMTSLSTIILRNCKISSDLGAIDFSKFEHLELLFLGNNS

LTGRLPDGISSSLKAIDFSYNQLTGSFPSWASQNNLQLNLVANNFLLESTSDSTLPWGLNCLQQDTPCFRGSPKY

YSFAVDCGSNGSTRGSDDTIYEADPTNLGAATYYVTGQTRWGVSSVGNYFQREDAKNIIYSSQNFQNVVHSELFQ

TARMSPSSLRYYGLGLENGNYTVLLQFAEFAFPDSQTWLSLGRRVFDIYIQGALKEKDFDIKKTAGGKSFRVVNR

SFMVTVSKNFLEIHLFWAGKGTDAIPIKGYYGPMISALRVTPNFTPTVRNGIPKRESKAGAISGILIGAIVLVLA

ALFGVFTLIKKRRALAQQKEELYNLVGRPDVFSYAELKLATDNFNSQNILGEGGFGPVYKGKLPDERVIAVKQLS

QSSHQGTSQFVTEVATISAVQHRNLVILHGCCIDSKTPLLVYEYLENGSLDRAIFGDSNLNLDWVMRFEIILGIA

RGLIYLHEESSIRIVHRDIKASNVLLDTNLVPKISDFGLAKLYDENQTHVSTRIAGTLGYLAPEYAMRGHLSEKA

DIFAFGVVMLETVAGRPNTDNSLEESKICLLEWAWGLYEKDQALGIVDPSLKEFGKDEAFRAICVALVCTQGSPH

QRPPMSKVVAMLTGDVDVAKVVTKPSYITEWQLRGGGNSSNTTSS

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	82	105	1.5
LRR [Pfam ls]	106	129	0.13
LRR [Pfam ls]	215	235	4.6
Ser/Thr pkinase [Pfam fs]	569	767	5.8e-49
Ser/Thr pkinase [Pfam ls]	569	839	9.1e-43

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	82	105	0.057
LRR [sensitive, ls]	82	105	1.5
LRR [sensitive, ls]	106	129	0.0049
LRR [sensitive, ls]	106	129	0.13
LRR [sensitive, ls]	130	153	0.41
LRR [sensitive, ls]	130	153	11
LRR [sensitive, ls]	190	214	0.65
LRR [sensitive, ls]	190	214	18
LRR [sensitive, ls]	215	235	0.17
LRR [sensitive, ls]	215	235	4.6
LRR [sensitive, ls]	237	261	0.28
LRR [sensitive, ls]	237	261	7.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	48	253	1e-13
FLS2 [A.thaliana]	51	291	7e-16
FLS2 [A.thaliana]	51	251	7e-11
FLS2 [A.thaliana]	52	275	2e-21
FLS2 [A.thaliana]	52	269	4e-17
Xa21 [O. sativa]	54	270	3e-19
FLS2 [A.thaliana]	58	254	3e-15
Xa21 [O. sativa]	58	253	8e-16
CLV2 [A. thaliana]	59	282	1e-13
CLV2 [A. thaliana]	59	253	3e-11
FLS2 [A.thaliana]	61	147	4e-12
FLS2 [A.thaliana]	63	188	1e-11
Cf-9 [L. pimpinellifolium]	66	261	3e-11
CLV2 [A. thaliana]	66	250	3e-11
CLV2 [A. thaliana]	66	243	1e-10
FLS2 [A.thaliana]	67	280	2e-19
FLS2 [A.thaliana]	67	254	3e-18
FLS2 [A.thaliana]	67	290	4e-17
FLS2 [A.thaliana]	507	837	7e-42
Xa21 [O. sativa]	515	659	2e-11
Pto [L. esculentum]	557	834	4e-53
Rpg1 [Hordeum vulgare]	557	838	1e-35
Rpg1 [Hordeum vulgare]	557	834	4e-29

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	512	534	out -> in

Report for 6483.m00184

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)