Report for 6487.m00145

 > 6487.m00145, length: 1014, copies: 1 

MSSSTKRLVRPHHLAKPLLTMLHILLQVQAIAALTDDATAPVIQCLPDQASALLRLKNSFNKTAGGYSTAFRSWI

TGTDCCHWDGVDCGGGEDGRVTSLVLGGHNLQAGSISPALFRLTSLRYLDISGNNFSMSQLPVTGFENLTELTHL

DLSDTNIAGEVPAGIGSLVNLVYLDLSTSFYIIYYDDENKMMPFASDNFWQLSVPNMETLLANLTNLEELHMGMV

DMSGNGERWCDDIAKFTPKLQVLSLPYCSLSGPICTSLSSMNSLTRIELHYNHLSGSVPEFLAGFSNLTVLQLSK

NKFEGLFPPIIFQHKKLVTINITNNPGLSGSLPNFSQDSKLENLLISSTNFTGIIPSSISNLKSLTKLDLGASGF

SGMLPSSLGSLKYLDLLEVSGIQLTGSMAPWISNLTSLTVLKFSDCGLSGEIPSSIGNLKKLSMLALYNCKFSGK

VPPQIFNLTQLQSLQLHSNNLAGTVELTSFTKLKNLSVLNLSNNKLLVLHGENSSSLVPFPKIKLLRLASCSIST

FPNILKHLHEITTLDLSHNKIQGAIPQWAWETWRGMYFLLLNISHNNITSLGSDPLLPLEIDFFDLSFNSIEGPI

PVPQEGSTMLDYSSNQFSSMPLHYSTYLGETFTFKASKNKLSGNIPSICSAPRLQLIDLSYNNLSGSIPSCLMED

VTALQILNLKENKLVGTIPDNIKEGCALEAIDLSGNLFEGRIPRSLVACRNLEILDIGNNEISDSFPCWMSKLPK

LQVLALKSNKFTGQIMDPSYTVDGNSCEFTELRIADMASNNFNGTLPEAWFTMLKSMNAISDNDTLVMENQYYHG

QTYQFTAAVTYKGNYITISKILRTLVLIDFSNNAFHGTIPETIGELVLLHGLNMSHNSLTGPIPTQFGRLNQLES

LDLSSNELFGEIPKELASLNFLSILNLSYNTLVGRIPNSYQFSTFSNNSFLGNTGLCGPPLSKQCDNPQESTVMP

YVSEKSIDVLLVLFTALGFGVSFAITILIVWGRHMKKQR

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	120	145	0.0033
LRR [Pfam ls]	146	169	0.6
LRR [Pfam ls]	244	267	4.3
LRR [Pfam ls]	268	291	0.22
LRR [Pfam ls]	292	315	4.4
LRR [Pfam ls]	340	363	0.075
LRR [Pfam ls]	364	387	4
LRR [Pfam ls]	412	435	0.055
LRR [Pfam ls]	436	459	5.4
LRR [Pfam ls]	460	484	0.29
LRR [Pfam ls]	485	508	5.7
LRR [Pfam ls]	512	534	0.74
LRR [Pfam ls]	535	559	0.1
LRR [Pfam ls]	653	677	0.053
LRR [Pfam ls]	726	749	0.15
LRR [Pfam ls]	849	872	5
LRR [Pfam ls]	873	896	4.5
LRR [Pfam ls]	897	920	0.041

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	95	119	1.6
LRR [sensitive, ls]	95	119	36
LRR [sensitive, ls]	120	145	0.00015
LRR [sensitive, ls]	120	145	0.0033
LRR [sensitive, ls]	146	169	0.027
LRR [sensitive, ls]	146	169	0.6
LRR [sensitive, ls]	244	267	0.19
LRR [sensitive, ls]	244	267	4.3
LRR [sensitive, ls]	268	291	0.0097
LRR [sensitive, ls]	268	291	0.22
LRR [sensitive, ls]	292	315	0.19
LRR [sensitive, ls]	292	315	4.4
LRR [sensitive, ls]	316	339	0.29
LRR [sensitive, ls]	316	339	6.6
LRR [sensitive, ls]	340	363	0.0033
LRR [sensitive, ls]	340	363	0.075
LRR [sensitive, ls]	364	387	0.18
LRR [sensitive, ls]	364	387	4
LRR [sensitive, ls]	388	411	1.6
LRR [sensitive, ls]	388	411	35
LRR [sensitive, ls]	412	435	0.0024
LRR [sensitive, ls]	412	435	0.055
LRR [sensitive, ls]	436	459	0.24
LRR [sensitive, ls]	436	459	5.4
LRR [sensitive, ls]	460	484	0.013
LRR [sensitive, ls]	460	484	0.29
LRR [sensitive, ls]	485	508	0.25
LRR [sensitive, ls]	485	508	5.7
LRR [sensitive, ls]	512	534	0.033
LRR [sensitive, ls]	512	534	0.74
LRR [sensitive, ls]	535	559	0.0045
LRR [sensitive, ls]	535	559	0.1
LRR [sensitive, ls]	562	585	0.29
LRR [sensitive, ls]	562	585	6.5
LRR [sensitive, ls]	653	677	0.0024
LRR [sensitive, ls]	653	677	0.053
LRR [sensitive, ls]	678	698	0.47
LRR [sensitive, ls]	678	698	11
LRR [sensitive, ls]	702	725	0.35
LRR [sensitive, ls]	702	725	7.9
LRR [sensitive, ls]	726	749	0.0069
LRR [sensitive, ls]	726	749	0.15
LRR [sensitive, ls]	781	805	1.7
LRR [sensitive, ls]	781	805	37
LRR [sensitive, ls]	849	872	0.22
LRR [sensitive, ls]	849	872	5
LRR [sensitive, ls]	873	896	0.2
LRR [sensitive, ls]	873	896	4.5
LRR [sensitive, ls]	897	920	0.0018
LRR [sensitive, ls]	897	920	0.041
LRR [sensitive, ls]	921	943	0.82
LRR [sensitive, ls]	921	943	18

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Cf-9 [L. pimpinellifolium]	45	1006	1e-103
CLV2 [A. thaliana]	48	711	9e-48
Xa21 [O. sativa]	52	742	1e-50
FLS2 [A.thaliana]	105	711	1e-45
FLS2 [A.thaliana]	234	1013	8e-78
Xa21 [O. sativa]	333	937	6e-42
CLV2 [A. thaliana]	340	966	2e-54
Xa21 [O. sativa]	365	958	6e-50
CLV2 [A. thaliana]	375	952	6e-28

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	984	1006	out -> in

Report for 6487.m00145

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)