Report for 6504.m00159

 > 6504.m00159, length: 954, copies: 1 

MAAPVPGGCARMRRVVLGVVLLLSVCVRASHAVTDSQDTSVLRALMDQWQNAPPTWGQSDDPCSDSPWDGVVYVY

PLLPDCFSKISTMGIKGVLAADIGQLTELQSLDMSFNKDLGGVLTPNIGNLKQLTTLILAGCSFHGNIPDELGSL

PKLSYMALNSNQFSGKIPASMGNLSNLYWFDIADNQLSGPLPISTNGGMGLDKLFKTKHFHFNKNQLSGPIPDAL

FSPEMTLIHLLFDGNKFTGNIPDSLGLVTTLEVVRLDRNSLSGPVPENLNNLTKVNELDLSNNTFDPSPSPQWFW

RLPQLSALIIQSGRLYGTVPMRLFSGPQLQQVILDGNAFNGTLDMGKYISSELSIVSLKDNQLSSVTVTASYNGT

LSLAGNPVCDRLPNTQYCNVTQRAAAAPYSTSLVKCFSGTCNAVGESMSPQSCACAYPYQGVMYFRAPFFGDVTN

GTAFQELESRLWTKLDLTPGSVFLQDPFFNADAYMQVQVKLFPSGSAYFNRSEVMRIGFDLSNQTFKPPKEFGPY

YFIASPYPFPEERSSSRSKGAIIGIAAGCGVLVVALVGAAVYALVQRRRAQKAREELGGPFASWKRSEERGGAPR

LKGARWFSYEELKRSTNNFAEANELGYGGYGKVYRGMLPTGTFIAIKRAQQGSMQGGHEFKTEIELLSRVHHKNL

VGLVGFCFEQGEQMLVYEFMSAGTLRDSLSGKSGLHLDWKKRLRVALGAARGLAYLHELADPPIIHRDVKSSNIL

MDEHLTAKVADFGLSKLVSDTERGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELIIAKQPIEKGKY

IVREVKRAFDAGDAEFCGIKDMIDARIMNTNHLAAFSKFVQLALRCVEEVAGARPSMSDVVKEIEMMLQSEGLSS

ASTSASTSATEFDVTKGAPRHPYNDPLPKKDKDMSTDSFDYSGGYSFQSKIEPK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	103	127	5.7
LRR [Pfam ls]	128	151	1
LRR [Pfam ls]	255	278	0.99
LRR [Pfam ls]	279	303	2.9
Ser/Thr pkinase [Pfam fs]	619	813	1.8e-45
Ser/Thr pkinase [Pfam ls]	619	891	1.2e-43

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	103	127	0.18
LRR [sensitive, ls]	103	127	5.7
LRR [sensitive, ls]	128	151	0.033
LRR [sensitive, ls]	128	151	1
LRR [sensitive, ls]	152	175	1.1
LRR [sensitive, ls]	152	175	33
LRR [sensitive, ls]	176	197	2.2
LRR [sensitive, ls]	176	197	69
LRR [sensitive, ls]	206	229	1.3
LRR [sensitive, ls]	206	229	42
LRR [sensitive, ls]	231	254	0.4
LRR [sensitive, ls]	231	254	12
LRR [sensitive, ls]	255	278	0.032
LRR [sensitive, ls]	255	278	0.99
LRR [sensitive, ls]	279	303	0.092
LRR [sensitive, ls]	279	303	2.9

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
CLV2 [A. thaliana]	35	364	6e-17
Cf-9 [L. pimpinellifolium]	55	363	6e-20
Xa21 [O. sativa]	77	338	2e-22
CLV2 [A. thaliana]	78	389	1e-20
FLS2 [A.thaliana]	82	390	2e-25
Xa21 [O. sativa]	82	363	2e-19
Cf-9 [L. pimpinellifolium]	85	364	2e-14
CLV2 [A. thaliana]	85	387	4e-16
FLS2 [A.thaliana]	85	364	2e-21
Xa21 [O. sativa]	85	345	6e-19
FLS2 [A.thaliana]	89	341	4e-25
CLV2 [A. thaliana]	90	343	3e-15
FLS2 [A.thaliana]	90	889	6e-60
FLS2 [A.thaliana]	90	408	4e-21
FLS2 [A.thaliana]	92	363	6e-26
FLS2 [A.thaliana]	94	388	5e-24
Cf-9 [L. pimpinellifolium]	102	343	1e-19
Xa21 [O. sativa]	112	390	1e-23
Xa21 [O. sativa]	128	366	2e-16
Rpg1 [Hordeum vulgare]	605	889	1e-39
Pto [L. esculentum]	607	894	2e-57
Rpg1 [Hordeum vulgare]	607	890	1e-27

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	548	570	out -> in

Report for 6504.m00159

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)