Report for 6533.m00135

 > 6533.m00135, length: 927, copies: 1 

MGVSPWIIIFLLIVLVQAFVASADTNAQDTSGLNGLAGSWGSAPSNWAGNDPCGDKWIGIICTGNRVTSMLKTVK

FRTVRDAFRGHSVLIRIAVPGLILQQELEWPPSFNHWNLEQAPKLNSCRLRLYRSLNSNKFTGSIPPSLGGLSKL

YWFDLADNQLTGGLPISNATSPGLDNLTSTKHFHFGINQLSGSIPSQIFNSNMKLIHLLLDNNKFSGSIPSTLGL

LNTLEVLRFDNNAQLTGPVPTNLKNLTKLAEFHLANSNLTGPLPDLTGMSSLSFVYLENLRISGEVPQSLFSLPS

IQTLRLRGNRLNGTLNIADFSSQLQLVDLRDNFITALTVGTQYKKTLMLSGNPYCNQVNDDVHCKATGQSNPALP

PYKTTSNCPALPPTCLSTQQLSPTCICSVPYRGTLFFRSPGFSDLGNSSYFIQLEGTMKAKFLNLSLPVDSIAIH

DPFVDTNNNLEMSLEVYPSGKDQFSEQDISGIGFILSNQTYKPPSNFGPYYFLGQTYSFANGALQTSKSNTNHIP

LIVGASVGGAAVIAALLALTICIARRKRSPKQTEDRSQSYVSWDIKSTSTSTAPQVRGARMFSFDELKKVTNNFS

EANDIGTGGYGKVYRGTLPTGQLVAVKRSQQGSLQGNLEFRTEIELLSRVHHKNVVSLVGFCFDQGEQMLVYEYV

PNGTLKESLTGKSGVRLDWKRRLRVVLGAAKGIAYLHELADPPIIHRDIKSSNVLLDERLNAKVSDFGLSKLLGE

DGRGQITTQVKGTMGYLDPEYYMTQQLTDRSDVYSFGVLLLEVITARKPLERGRYVVREVKEAVDRRKDMYGLHE

LLDPALGASSALAGLEPYVDLALRCVEESGADRPSMGEAVAEIERIAKVAGAGGAAAAESAASDSMSYAASRTPR

HPYGGGGGDSASEYSGGGLPSMRVEPK

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	204	227	1.8
LRR [Pfam ls]	228	252	0.9
Ser/Thr pkinase [Pfam fs]	599	795	1.1e-45
Ser/Thr pkinase [Pfam ls]	599	865	9.3e-41

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	149	178	0.85
LRR [sensitive, ls]	149	178	19
LRR [sensitive, ls]	179	203	3.8
LRR [sensitive, ls]	179	203	86
LRR [sensitive, ls]	204	227	0.078
LRR [sensitive, ls]	204	227	1.8
LRR [sensitive, ls]	228	252	0.04
LRR [sensitive, ls]	228	252	0.9
LRR [sensitive, ls]	253	275	0.43
LRR [sensitive, ls]	253	275	9.6
LRR [sensitive, ls]	276	299	0.92
LRR [sensitive, ls]	276	299	21
LRR [sensitive, ls]	300	321	0.85
LRR [sensitive, ls]	300	321	19
LRR [sensitive, ls]	323	345	1.7
LRR [sensitive, ls]	323	345	38

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	57	306	5e-15
FLS2 [A.thaliana]	110	315	4e-17
Cf-9 [L. pimpinellifolium]	117	352	1e-12
Cf-9 [L. pimpinellifolium]	119	332	7e-12
CLV2 [A. thaliana]	120	318	3e-18
CLV2 [A. thaliana]	123	340	7e-13
FLS2 [A.thaliana]	125	315	1e-19
FLS2 [A.thaliana]	125	270	2e-16
FLS2 [A.thaliana]	128	332	4e-20
Xa21 [O. sativa]	128	684	2e-20
Cf-9 [L. pimpinellifolium]	130	315	7e-12
CLV2 [A. thaliana]	130	332	3e-19
FLS2 [A.thaliana]	130	871	3e-59
FLS2 [A.thaliana]	130	340	1e-19
FLS2 [A.thaliana]	130	329	2e-11
Xa21 [O. sativa]	130	315	1e-18
Xa21 [O. sativa]	130	313	7e-15
Xa21 [O. sativa]	130	321	2e-13
FLS2 [A.thaliana]	131	335	3e-17
FLS2 [A.thaliana]	131	362	7e-16
FLS2 [A.thaliana]	134	335	3e-21
Xa21 [O. sativa]	166	322	1e-17
Pto [L. esculentum]	572	869	3e-60
Rpg1 [Hordeum vulgare]	579	871	4e-31
Rpg1 [Hordeum vulgare]	585	874	3e-41

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	2	21	in -> out
putative TM domain	526	548	out -> in

Report for 6533.m00135

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)