Report for 6538.m00115

 > 6538.m00115, length: 780, copies: 1 

MARFSPNLQVISMPYCSLSGPICRSLSSLRSLSVIELHFNQLSGPVPEFLAALSNLTVLQLSNNMFEGVFPPIIL

QHEKLTTINLTKNLGISGNFPNFSADSNLQSLSVSKTNFSGTIPSSISNLKSLKELDLGVSGLSGVLPSSIGKLK

SLSLLEVSGLELVGSMPSWISNLTSLTILKFFSCGLSGPIPASIGNLTKLTKLALYNCHFSGEIPPQILNLTHLQ

SLLLHSNNFVGTVELASYSKMQNLSVLNLSNNKLVVMDGENSSSVVPYPSISFLRLASCSISSFPNILRHLHEIA

FLDLSYNQIQGAIPQWAWKTSTQGFALFNLSHNKFTSIGSHPLLPVYIEFFDLSFNNIEGAIPIPKEGSVTLDYS

NNRFSSLPLNFSTYLTKTVFFKASNNSISGNIPPSICDGIKSLQLIDLSNNNLTGLIPSCLMEDADALQVLSLKD

NHLTGELPGNIKEGCALSALVFSGNSIQGQLPRSLVACRNLEILDIGNNKISDSFPCWMSKLPQLQVLVLKANRF

IGQILDPSYSGDTNNCQFTKLRIADIASNNFSGMLPAEWFKMLKSMMNSSDNGTSVMENQYYHGQTYQFTAAVTY

KGNDMTISKILTSLVLIDVSNNEFHGSIPSNIGELTLLHGLNMSHNMLTGPIPTQFGNLNNLESLDLSSNKLSGE

IPQELPSLNFLATLNLSYNMLAGRIPQSSHFLTFSNASFEGNIGLCGPPLSKQCSYPTEPNIMTHASEKEPIDVL

LFLFAGLGFGVCFGITILVIWGSNNSKQQT

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	7	30	6.2
LRR [Pfam ls]	31	54	0.57
LRR [Pfam ls]	55	78	3.3
LRR [Pfam ls]	103	126	0.12
LRR [Pfam ls]	127	150	2.9
LRR [Pfam ls]	175	198	4.7
LRR [Pfam ls]	199	222	0.3
LRR [Pfam ls]	248	268	5.4
LRR [Pfam ls]	275	297	3.6
LRR [Pfam ls]	298	322	2.6
LRR [Pfam ls]	417	438	0.099
LRR [Pfam ls]	490	513	0.12
LRR [Pfam ls]	613	636	0.35
LRR [Pfam ls]	637	660	1.9
LRR [Pfam ls]	661	684	0.0031

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	7	30	0.28
LRR [sensitive, ls]	7	30	6.2
LRR [sensitive, ls]	31	54	0.026
LRR [sensitive, ls]	31	54	0.57
LRR [sensitive, ls]	55	78	0.15
LRR [sensitive, ls]	55	78	3.3
LRR [sensitive, ls]	79	102	0.98
LRR [sensitive, ls]	79	102	22
LRR [sensitive, ls]	103	126	0.0055
LRR [sensitive, ls]	103	126	0.12
LRR [sensitive, ls]	127	150	0.13
LRR [sensitive, ls]	127	150	2.9
LRR [sensitive, ls]	151	174	0.46
LRR [sensitive, ls]	151	174	10
LRR [sensitive, ls]	175	198	0.21
LRR [sensitive, ls]	175	198	4.7
LRR [sensitive, ls]	199	222	0.013
LRR [sensitive, ls]	199	222	0.3
LRR [sensitive, ls]	223	247	0.58
LRR [sensitive, ls]	223	247	13
LRR [sensitive, ls]	248	268	0.24
LRR [sensitive, ls]	248	268	5.4
LRR [sensitive, ls]	275	297	0.16
LRR [sensitive, ls]	275	297	3.6
LRR [sensitive, ls]	298	322	0.11
LRR [sensitive, ls]	298	322	2.6
LRR [sensitive, ls]	324	344	2
LRR [sensitive, ls]	324	344	46
LRR [sensitive, ls]	347	369	3.7
LRR [sensitive, ls]	347	369	82
LRR [sensitive, ls]	392	416	1.4
LRR [sensitive, ls]	392	416	31
LRR [sensitive, ls]	417	438	0.0044
LRR [sensitive, ls]	417	438	0.099
LRR [sensitive, ls]	442	462	0.3
LRR [sensitive, ls]	442	462	6.8
LRR [sensitive, ls]	466	489	1.8
LRR [sensitive, ls]	466	489	40
LRR [sensitive, ls]	490	513	0.0052
LRR [sensitive, ls]	490	513	0.12
LRR [sensitive, ls]	545	569	0.53
LRR [sensitive, ls]	545	569	12
LRR [sensitive, ls]	613	636	0.015
LRR [sensitive, ls]	613	636	0.35
LRR [sensitive, ls]	637	660	0.086
LRR [sensitive, ls]	637	660	1.9
LRR [sensitive, ls]	661	684	0.00014
LRR [sensitive, ls]	661	684	0.0031
LRR [sensitive, ls]	685	708	0.44
LRR [sensitive, ls]	685	708	9.8

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Xa21 [O. sativa]	1	257	2e-20
Cf-9 [L. pimpinellifolium]	4	458	2e-28
CLV2 [A. thaliana]	4	479	2e-39
FLS2 [A.thaliana]	4	499	1e-46
Cf-9 [L. pimpinellifolium]	5	506	1e-36
Xa21 [O. sativa]	7	506	2e-44
FLS2 [A.thaliana]	8	722	2e-73
FLS2 [A.thaliana]	12	718	7e-59
Xa21 [O. sativa]	17	529	3e-43
Cf-9 [L. pimpinellifolium]	25	773	3e-97
CLV2 [A. thaliana]	106	761	5e-59
Xa21 [O. sativa]	107	722	7e-54

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	749	771	out -> in

Report for 6538.m00115

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)