Report for 6540.m00148

 > 6540.m00148, length: 927, copies: 1 

MGVMVPLLSKLIESMEQPRFKDLKNDLKSLRAELASMEAVMLKFATQDDTDLQVKEWMRQVREVGYDTDDWIDSH

PLVAAETKGSRIFSRNNRRRKLAELIKELKDRVEDASQRRTRYMLQSAPVVDDVTDDLRPSNVTVDPQLLYGVSR

RLVGLDEPMEELVRELRPGGGEQQHFKVVSIVGGGGLGKTTLAKEVYRKIHGEFVSCAFVTVGQNPHIPTVLLNM

LRQLNPLQPQGDDTEQQMDEPTVVGKIREFLDKKRYFITIDDIWSISAWKDIKYALPENTPGSRIVATTRISDVA

KSCSVRPTDFTYPMKHLSKTDSKQLFLGRLQSPKKIYSSETDLEEGVFHDVWNICGGMPLAMIVIAGMLNRKSPG

CPEDNKSIKKALEKHPTLQGMRRILRICYSDLSLPVRTCLLYLSIFRPEDETVEKNRLIWRWIAERFIPVLKQEQ

VTLWETAESYFNELVNRQLIQPVEAGDVVKVKVHDVVLEFIASVAAEENFVTSDMVLRCKPRDIVRRASLNCIDD

DESTGGLSQVRSLTVFGVLAEPMKSSIVYLQLLRVLDFKDAKGLKDEDVQGLERLFFLKYLGLGGKFVTKLPEKW

KELQNLEALDVRETAVKELPEAIARRCSKLACLLARRLAVGEGMHSLLHLQELSMVSVTDAASLDRMTNLVVGLT

KLRKLGVSLFFDATGDQHQHAVAAAAPDDAKLAASLERIEKCGVESLLLDVVGEGKTRAALDQLVEKWALPRRLQ

KFTMRSEHYYFPKAPPKMAPHESLSHLEISIAELRKSDVGVLCTMPSLFYLKLSTRSSPLEADQTVVITNVGFQC

LQVFWFKCQDGGLGFDFGDGAMAQLLKLDLHFKQAKKPKLTGISNLSSLRQFHATVCCGKDDSEFKATEENIKQI

VSNHSKNPTWEVTMEMEIDKPTAAISI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	136	448	1.2e-33
NB-ARC [Pfam fs]	152	448	7.6e-36

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	920	4e-84
RPS2 [A. thaliana]	11	695	2e-18
I2 [L. esculentum]	19	620	9e-30
Pib [Oryza sativa].	37	304	5e-17
Pi-ta [Oryza sativa]	57	627	3e-68
Xa1 [Oryza sativa]	72	611	6e-16
RPM1 [A. thaliana]	87	878	3e-45
Pib [Oryza sativa].	151	648	2e-47

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	19	43
putative coiled-coil	91	116

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6540.m00148

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)