Report for 6572.m00148

 > 6572.m00148, length: 862, copies: 2 

MTDTVLSIAKSLVGSAVSKVASVAAEKMVLLLGVQKEIWFIKDELQRIQAFLMAAEPSKKSILLKVWVQQVRDLS

YDIEDCLDEFTVHVSSQTLSRQLMKLKDRHRIAIQIRNLRTRIEEVSTRNIRYNLIENDLTCTTTDERNLFMEDI

RNQSANNIEEADLVGFSGPKRELLDLIDVHANIGPTEVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITV

SQSFVRLELLKDLMMKLFGEEVLKKQMRELEGKVPQVDDLASYLRTELNERRNNNKGSWVIVTTRDVGLAKECTS

ELLIYQLKPLEISYAKELLLRKANKTTEDIESDKKMSDIITKIVKKCGYLPLAILTIGGVLATKEIREWETFYSQ

IPSELESNPNLEAMRRIVTLSYNYLPSHLKQCFLYLSIFPEDFEINRNRLGSKYCSKISFDWSIIRSLTMFAERP

VELEHSVCSSQLRMLRVLDLRDAQFTITQNDVNNIVLLCHLKYLRIARYNNASYIYSLPKSIGRLDGLQTLDLDS

TNISTLPTQITKLRSLRSLRCMKQYDFSSFTTCLTDTLCLPMIFTPSVSTSDRAEKIANLHLATKSFRSKSNGVK

VPKGICRLRDLQILGVVDIRRTSSRVIKELGQLSKLRKLYVVTKGSTKLKCEILYTAIQKLYSLQSLHMDAVGCT

GIGTLECLDSVSSPPPLLRTLRLNGSLEELPNWIERLTHLRKFYLLRTKLKEGKTMLILGALPNLMLLHFCHNAY

LGEKLVFKTGAFPNLRTLVTFNLDQQRDIRFEDGSSPQLEKIEIGRCRLESGIIGIIHLPRLKEISVEYKGKVAM

LAQLEGEVNAHPNCPVLRMAMDRSDHDLAGNAKGSPP

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam fs]	147	246	2e-18
NB-ARC [Pfam ls]	147	440	2.3e-38
NB-ARC [Pfam fs]	282	425	7.1e-27
LRR [Pfam ls]	517	539	0.56

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	464	492	3.9
LRR [sensitive, ls]	464	492	92
LRR [sensitive, ls]	517	539	0.024
LRR [sensitive, ls]	517	539	0.56
LRR [sensitive, ls]	692	713	2.6
LRR [sensitive, ls]	692	713	60
LRR [sensitive, ls]	788	810	0.72
LRR [sensitive, ls]	788	810	17

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	6	432	2e-42
RPM1 [A. thaliana]	8	817	2e-48
Pi-ta [Oryza sativa]	25	425	3e-26
I2 [L. esculentum]	41	743	1e-27
Pib [Oryza sativa].	48	339	7e-24
Pib [Oryza sativa].	159	432	1e-30
RPS2 [A. thaliana]	163	425	1e-13
Pib [Oryza sativa].	407	817	2e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6572.m00148

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)