Report for 6574.m00049

 > 6574.m00049, length: 1035, copies: 1 

MASSQIVLSPGHGLLLFPLKFLFFLPLVLTGGTEDDRQALLCFMSQLSAPSRALASWSNTSMEFCSWQGITCSSQ

SPRRAIALDLSSQGITGSIPPCIANLTFLTVLQLSNNSFHGSIPSELGLLNQLSYLNLSTNSLEGNIPSELSSCS

QLKILDLSNNNLQGSIPSAFGDLPLLQKLVLANSRLAGEIPESLGSSISLTYVDLGNNALTGRIPESLVNSSSLQ

VLRLMRNALSGQLPTNLFNSSSLTDICLQQNSFVGTIPPVTAMSSQVKYLDLSDNNLIGTMPSSLGNLSSLIYLR

LSRNILLGSIPESLGHVATLEVISLNSNNLSGSIPPSLFNMSSLTFLAMTNNSLIGKIPSNIGYTLPTIQELYLS

DVKFDGSIPASLLNASNLQTFYLANCGLTGSIPPLGSLPNLQKLDLGFNMFEADGWSFVSSLTNCSRLTRLMLDG

NNIQGNLPNTIGNLSSDLQWLWLGGNNISGSIPPEIGNLKGLTKLYMDCNLLTGNIPPTIENLHNLVDLNFTQNY

LSGVIPDAIGNLLQLTNLRLDRNNFSGSIPASIGQCTQLTTLNLAYNSLNGSIPSNIFQIYSLSVVLDLSHNYLS

GGIPEEVGNLVNLNKLSISNNRLSGEVPSTLGECVLLESVETQSNFLVGSIPQSFAKLVGIKIMDISQNKLSGKI

PEFLTSFSSVYYLNLSFNNFYGEIPIGGVFSNASVVSVEGNDGLCAWAPTKGIRFCSSLADRESMHKKLVLTLKI

TIPFVIVTITLCCVLVARSRKGMKLKPQLLPFNQHLEQITYEDIVKATKSFSSDNLIGSGSFGMVYKGNLEFRQD

QVAIKIFNLNIYGANRSFVAECEALRNVRHRNIIKIITSCSSVDSEGADFKALVFEYMKNGNLEMWLHPKKHEHS

QRNALTFSQRVNIVLEVAFALDYLHNHCVPPLIHCDLKPSNILLDLDMVAYVSDFGSARFLCPKSNLDQESVTSL

GCLKGTVGYIPPEYGMSKEISTKADVYSFGVILLEMITVIPSRNIPTTTVRARFTAAVGI

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	103	126	0.3
LRR [Pfam ls]	127	150	0.54
LRR [Pfam fs]	151	174	4.1e-06
LRR [Pfam ls]	151	174	5.9e-05
LRR [Pfam ls]	199	222	0.52
LRR [Pfam ls]	271	294	0.031
LRR [Pfam ls]	295	318	5.6
LRR [Pfam ls]	319	342	0.048
LRR [Pfam ls]	392	414	0.013
LRR [Pfam ls]	442	465	0.11
LRR [Pfam ls]	467	490	0.0069
LRR [Pfam ls]	491	514	0.44
LRR [Pfam ls]	515	538	0.19
LRR [Pfam ls]	539	562	0.49
LRR [Pfam ls]	563	587	0.39
LRR [Pfam ls]	612	635	0.92
Ser/Thr pkinase [Pfam fs]	801	1013	1.4e-44
Ser/Thr pkinase [Pfam ls]	801	1035	4.3e-27

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	79	102	0.9
LRR [sensitive, ls]	79	102	21
LRR [sensitive, ls]	103	126	0.013
LRR [sensitive, ls]	103	126	0.3
LRR [sensitive, ls]	127	150	0.023
LRR [sensitive, ls]	127	150	0.54
LRR [sensitive, ls]	151	174	2.5e-06
LRR [sensitive, ls]	151	174	5.9e-05
LRR [sensitive, ls]	175	195	2.5
LRR [sensitive, ls]	175	195	58
LRR [sensitive, ls]	199	222	0.023
LRR [sensitive, ls]	199	222	0.52
LRR [sensitive, ls]	223	246	0.67
LRR [sensitive, ls]	223	246	16
LRR [sensitive, ls]	247	269	0.88
LRR [sensitive, ls]	247	269	21
LRR [sensitive, ls]	271	294	0.0013
LRR [sensitive, ls]	271	294	0.031
LRR [sensitive, ls]	295	318	0.24
LRR [sensitive, ls]	295	318	5.6
LRR [sensitive, ls]	319	342	0.002
LRR [sensitive, ls]	319	342	0.048
LRR [sensitive, ls]	343	367	0.44
LRR [sensitive, ls]	343	367	10
LRR [sensitive, ls]	368	391	1.8
LRR [sensitive, ls]	368	391	43
LRR [sensitive, ls]	392	414	0.00057
LRR [sensitive, ls]	392	414	0.013
LRR [sensitive, ls]	415	441	0.43
LRR [sensitive, ls]	415	441	10
LRR [sensitive, ls]	442	465	0.0047
LRR [sensitive, ls]	442	465	0.11
LRR [sensitive, ls]	467	490	0.0003
LRR [sensitive, ls]	467	490	0.0069
LRR [sensitive, ls]	491	514	0.019
LRR [sensitive, ls]	491	514	0.44
LRR [sensitive, ls]	515	538	0.008
LRR [sensitive, ls]	515	538	0.19
LRR [sensitive, ls]	539	562	0.021
LRR [sensitive, ls]	539	562	0.49
LRR [sensitive, ls]	563	587	0.017
LRR [sensitive, ls]	563	587	0.39
LRR [sensitive, ls]	588	611	0.33
LRR [sensitive, ls]	588	611	7.7
LRR [sensitive, ls]	612	635	0.04
LRR [sensitive, ls]	612	635	0.92
LRR [sensitive, ls]	660	683	0.4
LRR [sensitive, ls]	660	683	9.2
LRR [sensitive, ls]	684	706	0.76
LRR [sensitive, ls]	684	706	18

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	15	1013	1e-158
CLV2 [A. thaliana]	36	724	1e-63
Cf-9 [L. pimpinellifolium]	56	719	3e-71
Xa21 [O. sativa]	178	912	1e-159
CLV2 [A. thaliana]	502	726	5e-20
Xa21 [O. sativa]	590	700	3e-11
Rpg1 [Hordeum vulgare]	767	1012	3e-19
Rpg1 [Hordeum vulgare]	788	1013	2e-29
Pto [L. esculentum]	792	1012	2e-24

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	744	766	out -> in
putative TM domain	744	766	out -> in

Report for 6574.m00049

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)