Report for 6592.m00227

 > 6592.m00227, length: 1294, copies: 1 

MASFSALSQNVAWVLYLCTFFCSILLAICNETEYDRQALLCFKSQLSGPSRALSSWSNTSLNFCSWDGVTCSVRR

PHRVIAIDLASEGITGTISRCIANLTSLTTLQLSNNSFHGSIPSRLGLLSELNNLNLSMNSLEGNIPSELSSCSQ

LEILGLWNNSIQGEIPASLSKCIHLQEINLSRNKLQGSIPSTFGNLPKLKTLVLARNRLTGDIPPFLGSSVSLRY

VDLGNNALTGSIPESLANSSSLQVLRLMSNSLSGQLPKSLLNTSSLIAICLQQNSFVGSIPAVTAKSSPIKYLNL

RNNYISGAIPSSLANLSSLLSLRLNENNLVGNIPESLGHIQTLEMLALNVNNLSGLVPPSIFNMSSLIFLAMANN

SLTGRLPSDIGYTLPKIQGLILSTNKFVGPIPASLLNAYHLEMLYLGKNSFTGLIPFFGSLPNLNELDVSYNMLE

PGDWGFMTSLSNCSRLTKLMLDGNNLQGNLPSSIGNLSSNLEALWLKNNKFFGPIPSEIGNLKSLNRLFMDYNVF

TGNIPPTIGNMNSLVVLSFAQNKLSGHIPDIFGNLSQLTDLKLDGNNFSGKIPASISQCTQLQILNIAHNSLDGN

IPSKIFEISSLSEEMDLSHNYLSGEIPNEVGNLIHLNRLVISNNMLSGKIPSSLGQCVVLEYLEIQNNFFVGSIP

QSFVNLVSIKRMDISQNNLSGNIPEFLTSLSSLHSLNLSYNNFDGVVPRGGVFDINAAVSLEGNDHLCTRVPKGG

IPFCSVLTDRKRKLKILVLVLEILIPAIVVAIIILSYVVRIYRRKEMQANPHCQLISEHMKNITYQDIVKATDRF

SSTNLIGTGSFGTVYKGNLEPQQDEVAIKVFNLGTCGAQRSFSVECEALRNIRHRNLVKIITLCCSVDSSGADFK

ALVFHYKANGNLDTWLHPRAHEHSKRKTLTFSQRINIALDVAFALDYLHNQCASPIVHCDLKPSNILLDLDMIAY

VSDFGLARCLNITANEYEGSSKSLTCLKGSIGYIPPEYGMSEVISTKGDVYSFGVLLLEMVTGSSPTDEKFNNGT

SLHEHVARAFPKNTSEIVDPTMLQGEIKVTTVMQNCIIPLVRIGLCCSVASPNDRWEMGQVSAEILKIKHELSSI

HGENGLGPASRGPLWAHVGKEGKKKRSVHTCERIQSHNFDFMKIACYEGVFKSYIQVTLLYHNYIYQIKKICQQI

DVTVTVLPARPCSLSGMILQILRKPKLSFGSDCKTSGMNKISPMEAAARVGGMVPWRREVEEKATVTEELEEVVL

PPYLSGGKAAGVREENKGG

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
LRR [Pfam ls]	102	125	0.12
LRR [Pfam ls]	150	173	4.6
LRR [Pfam fs]	174	197	2e-05
LRR [Pfam ls]	174	197	0.00032
LRR [Pfam ls]	198	220	0.34
LRR [Pfam ls]	222	245	0.034
LRR [Pfam ls]	246	270	7
LRR [Pfam ls]	294	317	1
LRR [Pfam ls]	318	341	7
LRR [Pfam ls]	415	437	0.093
LRR [Pfam ls]	465	488	0.091
LRR [Pfam ls]	490	513	5.2
LRR [Pfam ls]	514	537	7.1
LRR [Pfam ls]	538	561	0.2
LRR [Pfam ls]	562	585	0.54
LRR [Pfam ls]	586	610	2.6
LRR [Pfam ls]	635	658	1.5
LRR [Pfam ls]	659	682	4.3
LRR [Pfam ls]	683	706	2.4
Ser/Thr pkinase [Pfam fs]	825	1066	1.3e-43
Ser/Thr pkinase [Pfam ls]	825	1117	4e-37

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	102	125	0.0051
LRR [sensitive, ls]	102	125	0.12
LRR [sensitive, ls]	126	149	0.67
LRR [sensitive, ls]	126	149	16
LRR [sensitive, ls]	150	173	0.2
LRR [sensitive, ls]	150	173	4.6
LRR [sensitive, ls]	174	197	1.4e-05
LRR [sensitive, ls]	174	197	0.00032
LRR [sensitive, ls]	198	220	0.015
LRR [sensitive, ls]	198	220	0.34
LRR [sensitive, ls]	222	245	0.0015
LRR [sensitive, ls]	222	245	0.034
LRR [sensitive, ls]	246	270	0.3
LRR [sensitive, ls]	246	270	7
LRR [sensitive, ls]	294	317	0.043
LRR [sensitive, ls]	294	317	1
LRR [sensitive, ls]	318	341	0.3
LRR [sensitive, ls]	318	341	7
LRR [sensitive, ls]	342	365	0.61
LRR [sensitive, ls]	342	365	14
LRR [sensitive, ls]	366	390	0.44
LRR [sensitive, ls]	366	390	10
LRR [sensitive, ls]	391	412	3.3
LRR [sensitive, ls]	391	412	77
LRR [sensitive, ls]	415	437	0.004
LRR [sensitive, ls]	415	437	0.093
LRR [sensitive, ls]	438	464	0.49
LRR [sensitive, ls]	438	464	11
LRR [sensitive, ls]	465	488	0.0039
LRR [sensitive, ls]	465	488	0.091
LRR [sensitive, ls]	490	513	0.22
LRR [sensitive, ls]	490	513	5.2
LRR [sensitive, ls]	514	537	0.3
LRR [sensitive, ls]	514	537	7.1
LRR [sensitive, ls]	538	561	0.0085
LRR [sensitive, ls]	538	561	0.2
LRR [sensitive, ls]	562	585	0.023
LRR [sensitive, ls]	562	585	0.54
LRR [sensitive, ls]	586	610	0.11
LRR [sensitive, ls]	586	610	2.6
LRR [sensitive, ls]	611	634	1.3
LRR [sensitive, ls]	611	634	31
LRR [sensitive, ls]	635	658	0.066
LRR [sensitive, ls]	635	658	1.5
LRR [sensitive, ls]	659	682	0.18
LRR [sensitive, ls]	659	682	4.3
LRR [sensitive, ls]	683	706	0.1
LRR [sensitive, ls]	683	706	2.4
LRR [sensitive, ls]	707	729	0.41
LRR [sensitive, ls]	707	729	9.5

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
FLS2 [A.thaliana]	14	1124	1e-178
CLV2 [A. thaliana]	35	747	7e-72
Xa21 [O. sativa]	35	627	3e-83
Cf-9 [L. pimpinellifolium]	55	742	4e-76
Xa21 [O. sativa]	91	271	3e-19
Xa21 [O. sativa]	228	936	1e-159
Xa21 [O. sativa]	614	723	9e-12
Rpg1 [Hordeum vulgare]	811	1118	3e-26
Pto [L. esculentum]	816	1111	5e-24
Rpg1 [Hordeum vulgare]	822	1038	1e-16

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation
putative TM domain	10	29	out -> in
putative TM domain	10	29	out -> in
putative TM domain	767	789	in -> out
putative TM domain	767	789	in -> out

Report for 6592.m00227

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)