Report for 6633.m00148

 > 6633.m00148, length: 1073, copies: 1 

MGWLQQLKPLSDVPDKIGGFLFNLAWSKGTRLWNVEEEAEKLRRTEKRIRALLRDAEERRYIDDESVKLWLLELK

SVAYDAETLLDRLTTFTAVARLESAEPSRKRKRSWLNLQLGPRQRWGLDAKITEINERLDEIARGRKRFKFQPGD

AARRAQPGQRPRFVEVAACHDESSQIFGRAKEKEEVVQALLSDHTIPLPVISIYGAAGIGKTTLARLVYNNAEVQ

SSFPTRIWVCLSDKCDVTKATKMIMEAITKVKCDALSLDILQQQLQEHLSTTKFLLVIDNLWAEDYNFWELLRCP

LLAGEKGSKVLITTRNERVWRRTTSTILPVHLKGLDDEECWLLLKKYAFLHGQGRENDALSKTGRMIAADCRGSP

LAAKSLGMLLSDTNGEEEEWLNISNQMRILNEDNNRILPSLQISYHHLPYHLKQLFTLCCLFPVGHEFEKDEVIR

LWIAEGLIQCNARRRLEAEAGRFFDELLWRSFFETSGSSTNQRYRVPSLMNELASLVSKSECLCIEPGNLQGGIN

RDLVRYVSILCQKDELPELTMICNYENIRILKLSTEVRISLKCVPSELFHKLSCLRTLEMSNSELEELPESVGCL

THLRYIGLRKTLIKRLPDSVSTLFNLQTLDLRECYRLTELPEELSRLVNLRHLDLHLEWDRMVPIPMPRGIDKLT

SLQTLSRFTVTADAEGYCNMKELKDINIRGELCLLKLESATHENAGESKLSEKQYVENLMLQWSYNNNQAVDESM

RVIESLRPHSKLRSLWVDWYPGENFPGWMGESSFTYLENLRICDCRNSRLLPSFGELPKLKKLHLGGMHSLQSMG

TLLGFPSLEVLTLWDMPNLQTWCDSEEAELPKLKELYISHCPRLQNVTNLPRELAKLEINNCGMLCSLPGLQHLH

DLVVRRGNDQLIGWISELMSLTSLTLMHSTETMDIQQLQQLSALKRLKIGGFKQLSSVSDNSGMEALSSLEFLEI

SSCTELQRFSVVGLQSLKDFKLRHCTKLEALPTGLGNLGSLRCVEIHDIPNLRIDNTGTVLPDSVSYLTLSGCPD

LESWCRNTGAQRVKKIPNVKIGF

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	158	463	2e-58
NB-ARC [Pfam fs]	174	463	8e-59
LRR [Pfam ls]	579	601	0.2
LRR [Pfam ls]	625	648	0.052
LRR [Pfam ls]	878	900	8.5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	579	601	0.0063
LRR [sensitive, ls]	579	601	0.2
LRR [sensitive, ls]	602	624	1.3
LRR [sensitive, ls]	602	624	41
LRR [sensitive, ls]	625	648	0.0017
LRR [sensitive, ls]	625	648	0.052
LRR [sensitive, ls]	809	837	1.5
LRR [sensitive, ls]	809	837	48
LRR [sensitive, ls]	857	877	1.5
LRR [sensitive, ls]	857	877	48
LRR [sensitive, ls]	878	900	0.27
LRR [sensitive, ls]	878	900	8.5
LRR [sensitive, ls]	969	990	1.3
LRR [sensitive, ls]	969	990	40
LRR [sensitive, ls]	991	1014	0.77
LRR [sensitive, ls]	991	1014	24

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	34	703	6e-37
I2 [L. esculentum]	40	1052	1e-107
Pi-ta [Oryza sativa]	64	696	2e-28
RPM1 [A. thaliana]	117	886	5e-45
Pib [Oryza sativa].	172	653	1e-32
RPS2 [A. thaliana]	176	884	5e-28
Xa1 [Oryza sativa]	176	1043	5e-79
M [L. usitatissimum]	185	444	2e-11
N [N. glutinosa]	185	906	9e-16
RPP5 [A. thaliana]	185	1054	1e-20
RPP5 [A. thaliana]	511	987	1e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	34	58

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6633.m00148

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)