Report for 6634.m00090

 > 6634.m00090, length: 1014, copies: 1 

MATILGSLVGSCVNKLQGIITEEAILILGVKEELRKLQERMKQIQCFINDAERRGMEDSAVHNWISRLKDVMYDA

DDIIDLASFEGNKLLNGHSSSPRKTTACSALSPLSCFSNIRVRHEIGDKIRTLNRKLAEIEKDKIFATLENTQPA

DKGSTSELRKTCHIVEPNLVGKEIVHACRKLVSLVVAHKEDKAYKLAIVGTGGIGKTTLAQKVFNDQKLKGTFNK

HAWICVSQDYTPVSVLKQLLRTMEVQHAQEESAGELQSKLELAIKDKSFFLVLDDLWHSDVWTNLLRTPLHAATS

GIILITTRQDIVARGIGVEEAHRVDLMSPAVGWELLWKSMNIQDEREVQNLRDIGIEIVQKCGGLPLAIKVTARV

LASKDKTENEWKRILANNVWSMAKLPKEISDWTLKRNELIMMWVAEGFVEVHKDQLLEDTAEEYYYELISRNLLQ

PVDTSFDQSRCKMHDLLRELACYLSREECYIGDLKPLVANTICKLRRMLVVGEKDTVVIPCTGKQEIKLRTFTTD

HQLQGVDNTFFMRLTHLRVLDLSDSLVQTIPDYIGNLIHLRLFDLDGTNISCLPESIGSLQNLLILNLKRCKSLH

CLPLATTQLYNLRRLGLADTPINQVPKGIGRLKSLNDLEGFPIGDGSDNTKTQDGWNLEELAHLPQLRQLGMIKL

ERGNPRSSPDPFLLAEKKHLKVLELQCTKQTDESYSVENVSNVEQIFEKLTPPHNLEKLVIVNFFGCRFPTWLGT

AHLPLVKSVILVDCKSCVHFPSIGQLPNLKYLRIEGASAISNIGSEIVGCWEGNLRSTEAVAFPKLELLVIEDMP

NLEEWSFVEEEEEEEEEEEEEEEAQEEDASAAVKEAGEDGTCASKEEGALSPTPRSLWLLPCLTRLELDDCPKLM

ALPRLLGQQATNLKVLLIRDASCLKTVEDLPFLSGVLSIGGCEGLERVSNLPQVRELLVDECPNLRHVEELGGLE

QLWLAKNMQEISQLWVPGLQEQHRQLHGDEHELEVNEWL

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	156	429	4.1e-30
NB-ARC [Pfam fs]	196	392	3e-42
LRR [Pfam ls]	541	563	0.052
LRR [Pfam ls]	564	586	0.61
LRR [Pfam ls]	611	633	5

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	541	563	0.0047
LRR [sensitive, ls]	541	563	0.052
LRR [sensitive, ls]	564	586	0.056
LRR [sensitive, ls]	564	586	0.61
LRR [sensitive, ls]	611	633	0.45
LRR [sensitive, ls]	611	633	5
LRR [sensitive, ls]	778	802	2
LRR [sensitive, ls]	778	802	22
LRR [sensitive, ls]	887	911	1.7
LRR [sensitive, ls]	887	911	18
LRR [sensitive, ls]	912	934	4.6
LRR [sensitive, ls]	912	934	50
LRR [sensitive, ls]	953	975	1.6
LRR [sensitive, ls]	953	975	17

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	735	5e-46
RPM1 [A. thaliana]	13	750	7e-45
I2 [L. esculentum]	34	996	2e-79
Pi-ta [Oryza sativa]	58	636	1e-35
Xa1 [Oryza sativa]	145	831	1e-37
RPS2 [A. thaliana]	154	603	7e-31
Pib [Oryza sativa].	166	872	2e-34

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	828	861

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6634.m00090

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)