Report for 6634.m00093

 > 6634.m00093, length: 991, copies: 1 

MATVLDSFIGSCARKLQEIITKEAILILGVKDELRELQERMEQLRCFVSDAENRGMDDSAIHNWLSRLKDAMYDA

DDIIDLASFEGSKIRHEMGDKIRSLNRKIEKIAKDKIFTTLENTQPCDDKGSTSDLRKTSHIVEPNLVGTEIVHA

CRKLVRMILIHKEMRAYKLAIVGIGGIGKTTLAQKVYNDKKIKGSFSKQAWICVSQDYSPVSLLRQLLRSMDVQY

AQDESVEELHIKLESAIKDKSFFLVLDDLWHSDLWTSLLRTPLHGAATGIILVTTRSDIVALEIGVDLTHHVNLM

SLNVGWELLWKSMNIRDEKDVQNLHDIGIGIVQKCGGLPLAIKVVARVLASKEKSEKEWKKILAKNVWSKTKLPK

EISGGLYLSFDDLPQHLKQCFLHCIVYSEDLFIYRDYLIRLWIAEGFVEARKDQLLEDTAEEYYYELISRNLLQP

VDTFFDQSICKMHDLLRQLACHLSSEECYIGDPESLVGNTICKLRRMLVVTEKDTLLIPGTGKEKNKLRTFITDQ

KPLRIEKTFFMRFTYLRVLDLSDSLLQTVPEYVGNLIHLRLLDLDGTNISCLPESIGALENLQMLHLQRCKSLNH

LPLATTRLFNLRRLGLDDTPINMVPKGIGRLRFLNDLEGFPIGVGCANTKMQDGWNLKELAYLSQLRRLIMIRLE

RGAPYSSTESLLLTKKGHLKVLHLYCTEPTNESYSEEDVNNVEKIFEQLIPPCNLEDLCIVSFFGRSFPLWLGTT

YLSSLKHLTLMKCKHCEHLPPIGLLQNLKYLKIVGAVSITKIGLEFIGSDVSNSKTIEAVAFPKLESFIIKDMPN

WEQWSFVEEEEGEATKEGGEDGNSTKQKVKALSPRSFLLPCLKTLQLVCCPKLRALPRQLGQQATSLNELLIRGA

SCLKTVEDLPFLSGVLSVGRCVDLQRVSNFPQARELYVSGCPNLRHVEELSNLERLWLTKDMQYICSLWVPGLQE

QCCQVHGDELEVNEWV

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	126	428	8.7e-50
NB-ARC [Pfam fs]	169	428	3.2e-54
LRR [Pfam ls]	540	562	0.77
LRR [Pfam ls]	563	585	0.066
LRR [Pfam ls]	932	954	4.4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	540	562	0.071
LRR [sensitive, ls]	540	562	0.77
LRR [sensitive, ls]	563	585	0.0061
LRR [sensitive, ls]	563	585	0.066
LRR [sensitive, ls]	586	609	1.5
LRR [sensitive, ls]	586	609	17
LRR [sensitive, ls]	610	632	0.62
LRR [sensitive, ls]	610	632	6.8
LRR [sensitive, ls]	754	776	3.4
LRR [sensitive, ls]	754	776	37
LRR [sensitive, ls]	866	890	2.1
LRR [sensitive, ls]	866	890	23
LRR [sensitive, ls]	932	954	0.4
LRR [sensitive, ls]	932	954	4.4

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	791	8e-57
RPM1 [A. thaliana]	15	822	8e-55
I2 [L. esculentum]	34	983	6e-88
Xa1 [Oryza sativa]	92	795	2e-44
RPS2 [A. thaliana]	127	893	1e-41
Pi-ta [Oryza sativa]	138	704	3e-39
Pib [Oryza sativa].	139	647	4e-38

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	25	45

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6634.m00093

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)