Report for 6634.m00097

 > 6634.m00097, length: 1032, copies: 1 

MAAVLDALIVSCIKKLQFIITDKAILILGVEDELEELQRRTDVIRSSLQDAEARRMEDSAVEKWLDQLRDVMYDV

DDIIDLARFKGSILLADHPSSSSSKPTRCNCPSCHCNIWTRHEVAVKIRSLNQKIANISNDEVLQDLRRRPHPRN

GLIWTPIKTSSIVEPNLVGEEVILACRELVDLVIENKEKKDYKLGIVGTGGVGKTTLAQQIYNDEKITGNFDKHA

WVCVSTDSTQTSLLEEVLRIMKIRYGKAKSVEELQNKLKSAIKEKSFFLVLDDVWESNAWTNSLQKPLHAAAKGI

VIVTTRNEKVAQEIKVDHTHQVHLMSENVGWDLLWKSMGITEEKQVHHLRDIGIEIVHQCGYLPLAIKIIAKVLI

SKEKTNDEWKRILSNNSWYMNNLPDELRALYLSYSELSHQLKQCFLYCAIYPEHSTINRDDLTSMWVAEGFIDEQ

KGQLLEDTAVEYYNELIHRNLLQLDLSYFDLGGCKMHGLLRQLVCYLSREECFVGDPESQNGNKMSKMRRVSVVT

EKDTVVLPSMDKKQYKVRTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHIGNLIHMRLINLDGTNIS

RLPESIGNLQNLQVLNLQRCKSLYRLPLATTKLCNLRRLGLLDTPINKVPKGIGRLQFLNDLEGFPIGSVTYNKK

MQDGWNLEDLADLSQLRRLVMVKLERCTPCSSEDSFLLTNKEHLKVLYLECTEPTNEACSDEHVKHVENIFEQLV

PPQNLKDLSVLRFLGQNLPSWLCNVYLPSLKYLILSDCKSCIHLPPIWQLPNLERLKIVKATAITKIGPEFIGQF

PRSREAVAFPKLEWLIINDMPNWEEWAFTGEDEISLAAMKEGGGDGTAVAEEEEISLAAMNEGGEDGTTVTEKGE

ASFPRLCVLPSLKRLDIDNCPKLRALPQQLGHEATSLKELSLVAASCLKSVKDLPSLSGFLSVCRCEGLERVTEL

PKVRKLFVSVCPNLSCVEELGSLEQLWLDVNMEDSSPWVHGLREQYRHLDVYTWPRE

HMM searches against classifier domains (fs and ls)

Domain	Begin	End	E-value
NB-ARC [Pfam ls]	156	452	3.3e-59
NB-ARC [Pfam fs]	194	452	1e-63
LRR [Pfam ls]	565	587	0.48
LRR [Pfam ls]	588	610	0.41
LRR [Pfam ls]	779	801	3.9
LRR [Pfam ls]	911	935	4

Searches for specific additional domains (secondary HMMs)

Domain	Begin	End	E-value
LRR [sensitive, ls]	401	424	6.7
LRR [sensitive, ls]	401	424	73
LRR [sensitive, ls]	475	498	5.9
LRR [sensitive, ls]	475	498	65
LRR [sensitive, ls]	565	587	0.044
LRR [sensitive, ls]	565	587	0.48
LRR [sensitive, ls]	588	610	0.037
LRR [sensitive, ls]	588	610	0.41
LRR [sensitive, ls]	611	634	0.84
LRR [sensitive, ls]	611	634	9.2
LRR [sensitive, ls]	635	657	3.3
LRR [sensitive, ls]	635	657	36
LRR [sensitive, ls]	779	801	0.36
LRR [sensitive, ls]	779	801	3.9
LRR [sensitive, ls]	802	826	1.7
LRR [sensitive, ls]	802	826	19
LRR [sensitive, ls]	911	935	0.36
LRR [sensitive, ls]	911	935	4
LRR [sensitive, ls]	977	999	4
LRR [sensitive, ls]	977	999	44

BLAST searches against classifier sequences

Query sequence	Begin	End	E-value
Mla1 [Hordeum vulgare].	4	816	6e-65
RPM1 [A. thaliana]	13	639	3e-53
I2 [L. esculentum]	34	1003	4e-81
Pi-ta [Oryza sativa]	58	662	6e-36
Xa1 [Oryza sativa]	114	847	2e-46
Pib [Oryza sativa].	155	890	2e-37
RPS2 [A. thaliana]	169	846	4e-40
RPP5 [A. thaliana]	182	989	5e-12
N [N. glutinosa]	194	660	2e-11

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)

Domain	Begin	End	E-value

NCOILSv2.0 search for coiled-coil domains

Domain	Begin	End
putative coiled-coil	30	54

TM-HMM search for transmembrane domains

Domain	Begin	End	Orientation

Report for 6634.m00097

HMM searches against classifier domains (fs and ls)

Searches for specific additional domains (secondary HMMs)

BLAST searches against classifier sequences

HMM search against whole Pfam_ls HMM database(excluding classifier domains, except LRR)

NCOILSv2.0 search for coiled-coil domains

TM-HMM search for transmembrane domains

HMM search against whole Pfam_ls HMM database
(excluding classifier domains, except LRR)